Evidence map›Paper›PMID 36557735›Full record

ArticleMicroorganisms2022

Global Genomic Epidemiology of

Erica L Fonseca, Sergio M Morgado, Raquel V Caldart, Ana Carolina Vicente

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Extended-Spectrum β-Lactamase-ProducingAnimals : an open access journal from MDPI · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Erica L FonsecaLaboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz-FIOCRUZ, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0000-0002-5029-7389
Sergio M MorgadoLaboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz-FIOCRUZ, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0000-0003-4877-7639
Raquel V CaldartCentro de Ciências da Saúde, Universidade Federal de Roraima, Boa Vista 69300-000, RR, Brazil.ORCID 0000-0001-8679-9519
Ana Carolina VicenteLaboratório de Genética Molecular de Microrganismos, Instituto Oswaldo Cruz-FIOCRUZ, Rio de Janeiro 21040-360, RJ, Brazil.ORCID 0000-0001-7086-2042
Fundação Oswaldo Cruz · BRUniversidade Federal de Roraima · BR

Funding

National Council for Scientific and Technological Development not applicableOswaldo Cruz Foundation fellowship
6 · The paper itself

Abstract

backgroundMost of the extraintestinal human infections worldwide are caused by specific extraintestinal pathogenic

methodsA phylogenetic reconstruction based on 376 ST38 genomes recovered from environments, humans, livestock, and wild and domestic animals in all continents throughout three decades was performed. The global information concerning the ST38 resistome and virulome was also approached by in silico analyses.

resultsIn general, the phylogenomic analyses corroborated the zoonotic character of the ExPEC ST38, since clonal strains were recovered from both animal and human sources distributed worldwide. Moreover, our findings revealed that, independent of host sources and geographic origin, the genomes were distributed in two major clades (Clades 1 and 2). However, the ST38 accessory genome was not strictly associated with clades and sub-clades, as found for the type 2 T3SS ETT2 that was evenly distributed throughout Clades 1 and 2. Of note was the presence of the

conclusionsThis evidence corroborates the HPI association with successful

Indexed as

accessory genomeETT2genomic epidemiologyhigh-pathogenicity islandhigh-riskphylogenomicszoonosis

Identifiers

PMID36557735
PMCPMC9787326
OpenAlexW4311791358

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.