Evidence map›Paper›PMID 36556168›Full record

ArticleJournal of personalized medicine2022

Novel Potential Therapeutic Targets of PTPN Families for Lung Cancer.

Chin-Chou Wang, Wan-Jou Shen, Gangga Anuraga, Hoang Dang Khoa Ta, Do Thi Minh Xuan, Sih-Tong Chen, Chiu-Fan Shen, Jia-Zhen Jiang, Zhengda Sun, Chih-Yang Wang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Journal of personalized medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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  5. Structural analysis of the FERM domain of human protein tyrosine phosphatase non-receptor type 21.Acta crystallographica. Section F, Structural biology communications · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 4 countries.

Chin-Chou WangDivisions of Pulmonary & Critical Care Medicine, Department of Internal Medicine, Kaohsiung Chang Gung Memorial Hospital, Chang Gung University College of Medicine, Kaohsiung 83301, Taiwan.
Wan-Jou ShenDepartment of Biological Science and Technology, China Medical University, Taichung 40676, Taiwan.
Gangga AnuragaGraduate Institute of Cancer Biology and Drug Discovery, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.ORCID 0000-0002-0902-3968
Hoang Dang Khoa TaGraduate Institute of Cancer Biology and Drug Discovery, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.ORCID 0000-0001-8809-239X
Do Thi Minh XuanGraduate Institute of Cancer Biology and Drug Discovery, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.
Sih-Tong ChenDepartment of Biological Science and Technology, China Medical University, Taichung 40676, Taiwan.
Chiu-Fan ShenDivisions of Pulmonary & Critical Care Medicine, Department of Internal Medicine, Kaohsiung Chang Gung Memorial Hospital, Chang Gung University College of Medicine, Kaohsiung 83301, Taiwan.
Jia-Zhen JiangEmergency Department, Huashan Hospital North, Fudan University, Shanghai 201508, China.
Zhengda SunKaiser Permanente, Northern California Regional Laboratories, The Permanente Medical Group, 1725 Eastshore Hwy, Berkeley, CA 94710, USA.
Chih-Yang WangGraduate Institute of Cancer Biology and Drug Discovery, College of Medical Science and Technology, Taipei Medical University, Taipei 11031, Taiwan.ORCID 0000-0002-4137-5074
Wei-Jan WangDepartment of Biological Science and Technology, China Medical University, Taichung 40676, Taiwan.
Chang Gung University of Science and Technology · TWChina Medical University · TWChang Gung University · TWKaiser Permanente · USTaipei Medical University · TWUniversitas PGRI Semarang · ID

Funding

China Medical University CMU110-MF-47Kaohsiung Chang Gung Memorial Hospital CMRPG8E1661-3Kaohsiung Chang Gung Memorial Hospital CMRPG8F1351Kaohsiung Chang Gung Memorial Hospital CMRPG8F1441Kaohsiung Chang Gung Memorial Hospital CMRPG8H1201Kaohsiung Chang Gung Memorial Hospital CMRPG8K0481-2Kaohsiung Chang Gung Memorial Hospital CMRPG8L0521Kaohsiung Chang Gung Memorial Hospital CORPG8F1491-3Ministry of Education (MOE) in Taiwan DP2-111-21121-01-C-01-01Ministry of Education (MOE) in Taiwan DP2-111-21121-01-N-10National Science and Technology Council of Taiwan MOST-109-2320-B-038-009-MY2National Science and Technology Council of Taiwan MOST-110-2320-B-039-068National Science and Technology Council of Taiwan NSTC-111-2314-B-182A-151Taipei Medical University TMU-108-AE1-B16
6 · The paper itself

Abstract

Despite the treatment of lung adenocarcinoma (LUAD) having partially improved in recent years, LUAD patients still have poor prognosis rates. Therefore, it is especially important to explore effective biomarkers and exploit novel therapeutic developments. High-throughput technologies are widely used as systematic approaches to explore differences in expressions of thousands of genes for both biological and genomic systems. Recently, using big data analyses in biomedicine research by integrating several high-throughput databases and tools, including The Cancer Genome Atlas (TCGA), cBioportal, Oncomine, and Kaplan-Meier plotter, is an important strategy to identify novel biomarkers for cancer therapy. Here, we used two different comprehensive bioinformatics analysis and revealed protein tyrosine phosphatase non-receptor type (PTPN) family genes, especially PTPN1 and PTPN22, were downregulated in lung cancer tissue in comparison with normal samples. The survival curves indicated that LUAD patients with high transcription levels of PTPN5 were significantly associated with a good prognosis. Meanwhile, Gene Ontology (GO) and MetaCore analyses indicated that co-expression of the PTPN1, PTPN5, and PTPN21 genes was significantly enriched in cancer development-related pathways, including GTPase activity, regulation of small GTPase-mediated signal transduction, response to mechanical stimuli, vasculogenesis, organ morphogenesis, regulation of stress fiber assembly, mitogen-activated protein kinase (MAPK) cascade, cell migration, and angiogenesis. Collectively, this study revealed that PTPN family members are both significant prognostic biomarkers for lung cancer progression and promising clinical therapeutic targets, which provide new targets for treating LUAD patients.

Indexed as

big data analysisbioinformaticslung cancerprognosisPTPN family genes

Identifiers

PMID36556168
PMCPMC9784538
OpenAlexW4309845568

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.