Evidence map›Paper›PMID 36555794›Full record

ArticleInternational journal of molecular sciences2022

Detection of the Omicron SARS-CoV-2 Lineage and Its BA.1 Variant with Multiplex RT-qPCR.

Nikita D Yolshin, Andrey B Komissarov, Kirill V Varchenko, Tamila D Musaeva, Artem V Fadeev, Dmitry A Lioznov

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nikita D YolshinSmorodintsev Research Institute of Influenza, 197376 Saint Petersburg, Russia.ORCID 0000-0002-1050-5817
Andrey B KomissarovSmorodintsev Research Institute of Influenza, 197376 Saint Petersburg, Russia.ORCID 0000-0003-1733-1255
Kirill V VarchenkoSmorodintsev Research Institute of Influenza, 197376 Saint Petersburg, Russia.ORCID 0000-0002-3273-0660
Tamila D MusaevaSmorodintsev Research Institute of Influenza, 197376 Saint Petersburg, Russia.
Artem V FadeevSmorodintsev Research Institute of Influenza, 197376 Saint Petersburg, Russia.ORCID 0000-0003-3558-3261
Dmitry A LioznovSmorodintsev Research Institute of Influenza, 197376 Saint Petersburg, Russia.

Funding

Russian Ministry of Science and Higher Education 075-15-2022-313The Ministry of Health of the Russian Federation #121110800170-8
6 · The paper itself

Abstract

Whole genome sequencing (WGS) is considered the best instrument to track both virus evolution and the spread of new, emerging variants. However, WGS still does not allow the analysis of as many samples as qPCR does. Epidemiological and clinical research needs to develop advanced qPCR methods to identify emerging variants of SARS-CoV-2 while collecting data on their spreading in a faster and cheaper way, which is critical for introducing public health measures. This study aimed at designing a one-step RT-qPCR assay for multiplex detection of the Omicron lineage and providing additional data on its subvariants in clinical samples. The RT-qPCR assay demonstrated high sensitivity and specificity on multiple SARS-CoV-2 variants and was cross-validated by WGS.

Indexed as

COVID-19Biological AssayHumansPublic HealthSARS-CoV-2BA.1 qPCRBA* qPCRERS31delIns214EPEOmicron detectionOmicron RT-qPCRSARS-CoV-2 indelsSARS-CoV-2 RT-qPCRSARS-CoV-2 variants detection

Identifiers

PMID36555794
PMCPMC9784567

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.