Evidence map›Paper›PMID 36555748›Full record

ArticleInternational journal of molecular sciences2022

In Silico Study of the Interactions of Anle138b Isomer, an Inhibitor of Amyloid Aggregation, with Partner Proteins.

Maxim S Kondratyev, Vladimir R Rudnev, Kirill S Nikolsky, Denis V Petrovsky, Liudmila I Kulikova, Kristina A Malsagova, Alexander A Stepanov, Arthur T Kopylov, Anna L Kaysheva

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Maxim S KondratyevInstitute of Cell Biophysics, Russian Academy of Sciences, 142290 Pushchino, Russia.ORCID 0000-0001-6717-4206
Vladimir R RudnevBiobanking Group, Branch of Institute of Biomedical Chemistry "Scientific and Education Center", 109028 Moscow, Russia.
Kirill S NikolskyBiobanking Group, Branch of Institute of Biomedical Chemistry "Scientific and Education Center", 109028 Moscow, Russia.
Denis V PetrovskyBiobanking Group, Branch of Institute of Biomedical Chemistry "Scientific and Education Center", 109028 Moscow, Russia.
Liudmila I KulikovaBiobanking Group, Branch of Institute of Biomedical Chemistry "Scientific and Education Center", 109028 Moscow, Russia.
Kristina A MalsagovaBiobanking Group, Branch of Institute of Biomedical Chemistry "Scientific and Education Center", 109028 Moscow, Russia.ORCID 0000-0001-9404-1660
Alexander A StepanovBiobanking Group, Branch of Institute of Biomedical Chemistry "Scientific and Education Center", 109028 Moscow, Russia.ORCID 0000-0002-9113-9440
Arthur T KopylovBiobanking Group, Branch of Institute of Biomedical Chemistry "Scientific and Education Center", 109028 Moscow, Russia.ORCID 0000-0002-7199-372X
Anna L KayshevaBiobanking Group, Branch of Institute of Biomedical Chemistry "Scientific and Education Center", 109028 Moscow, Russia.ORCID 0000-0003-4472-2016
Institute of Biomedical Chemistry · RUInstitute of Cell Biophysics · RU

Funding

Russian Federation Fundamental Research Program for the long-term period for 2021-2030 №122092200056-9
6 · The paper itself

Abstract

Herein, we aimed to highlight current "gaps" in the understanding of the potential interactions between the Anle138b isomer ligand, a promising agent for clinical research, and the intrinsically disordered alpha-synuclein protein. The presence of extensive unstructured areas in alpha-synuclein determines its existence in the cell of partner proteins, including the cyclophilin A chaperone, which prevents the aggregation of alpha-synuclein molecules that are destructive to cell life. Using flexible and cascaded molecular docking techniques, we aimed to expand our understanding of the molecular architecture of the protein complex between alpha-synuclein, cyclophilin A and the Anle138b isomer ligand. We demonstrated the possibility of intricate complex formation under cellular conditions and revealed that the main interactions that stabilize the complex are hydrophobic and involve hydrogen.

Indexed as

alpha-SynucleinCyclophilin AAmyloidAmyloidogenic ProteinsBenzodioxolesLigandsMolecular Docking SimulationPyrazoles3-(1,3-benzodioxol-5-yl)-5-(3-bromophenyl)-1H-pyrazolealpha-SynucleinAmyloidAmyloidogenic ProteinsBenzodioxolesCyclophilin ALigandsPyrazolesalpha-synucleinAnle138b isomercyclophilin Amolecular docking

Identifiers

PMID36555748
PMCPMC9786835
OpenAlexW4312210651

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.