Evidence map›Paper›PMID 36555590›Full record

ArticleInternational journal of molecular sciences2022

Vibrational Analysis of Hydration-Layer Water around Ubiquitin, Unpeeled Layer by Layer: Molecular-Dynamics Perceptions.

José Angel Martinez-Gonzalez, Prithwish K Nandi, Niall J English, Aoife Gowen

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

José Angel Martinez-GonzalezSchool of Chemical & Bioprocess Engineering, University College Dublin, Belfield, D04 V1W8 Dublin, Ireland.ORCID 0000-0001-5262-6732
Prithwish K NandiSchool of Chemical & Bioprocess Engineering, University College Dublin, Belfield, D04 V1W8 Dublin, Ireland.
Niall J EnglishSchool of Chemical & Bioprocess Engineering, University College Dublin, Belfield, D04 V1W8 Dublin, Ireland.ORCID 0000-0002-8460-3540
Aoife GowenSchool of Biosystems Engineering, University College Dublin, Belfield, D04 N2E5 Dublin, Ireland.ORCID 0000-0002-9494-2204

Funding

European Research Council ERC-SG-335508 'BioWater'European Union's Horizon 2020 Research and Innovation programme under the Marie Skłodowska-Curie grant agreement No 665593Science Foundation Ireland SFI 15/ERC-I3142
6 · The paper itself

Abstract

Classical molecular-dynamics simulations have been performed to examine the interplay between ubiquitin and its hydration-water sub-layers, chiefly from a vibrational-mode and IR viewpoint-where we analyse individual sub-layers characteristics. The vibrational Density of States (VDOS) revealed that the first solvation sub-shell indicates a confined character therein. For layers of increasing distance from the surface, the adoption of greater bulk-like spectral behaviour was evident, suggesting that vibrational harmonisation to bulk occurs within 6-7 Å of the surface.

Indexed as

UbiquitinWaterMolecular Dynamics SimulationUbiquitinWaterinfrared spectrainterfacial watermolecular dynamicspower spectraubiquitin

Identifiers

PMID36555590
PMCPMC9785973

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.