Evidence map›Paper›PMID 36555561›Full record

ArticleInternational journal of molecular sciences2022

Effects of Active-Center Reduction of Plant-Type Ferredoxin on Its Structure and Dynamics: Computational Analysis Using Molecular Dynamics Simulations.

Tomoki Nakayoshi, Yusuke Ohnishi, Hideaki Tanaka, Genji Kurisu, Hiroko X Kondo, Yu Takano

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 6 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Tomoki NakayoshiGraduate School of Information Sciences, Hiroshima City University, 3-4-1 Ozukahigashi, Hiroshima 731-3194, Japan.
Yusuke OhnishiInstitute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita 565-0871, Japan.
Hideaki TanakaInstitute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita 565-0871, Japan.
Genji KurisuInstitute for Protein Research, Osaka University, 3-2 Yamadaoka, Suita 565-0871, Japan.ORCID 0000-0002-5354-0807
Hiroko X KondoGraduate School of Information Sciences, Hiroshima City University, 3-4-1 Ozukahigashi, Hiroshima 731-3194, Japan.ORCID 0000-0002-0782-9677
Yu TakanoGraduate School of Information Sciences, Hiroshima City University, 3-4-1 Ozukahigashi, Hiroshima 731-3194, Japan.ORCID 0000-0002-4165-8672
Hiroshima City University · JPThe University of Osaka · JP

Funding

FY 2022 President's Discretionary Grants, Kitami Institute of Technology N/AJapan Society for the Promotion of Science 19K06524Japan Society for the Promotion of Science 22K06164Ministry of Education, Culture, Sports, Science, and Technology (MEXT) of Japan 20H05879Ministry of Education, Culture, Sports, Science, and Technology (MEXT) of Japan 20H05883
6 · The paper itself

Abstract

"Plant-type" ferredoxins (Fds) in the thylakoid membranes of plants, algae, and cyanobacteria possess a single [2Fe-2S] cluster in active sites and mediate light-induced electron transfer from Photosystem I reaction centers to various Fd-dependent enzymes. Structural knowledge of plant-type Fds is relatively limited to static structures, and the detailed behavior of oxidized and reduced Fds has not been fully elucidated. It is important that the investigations of the effects of active-center reduction on the structures and dynamics for elucidating electron-transfer mechanisms. In this study, model systems of oxidized and reduced Fds were constructed from the high-resolution crystal structure of

Indexed as

CyanobacteriaFerredoxinsElectron TransportMolecular Dynamics SimulationOxidation-ReductionPlantsFerredoxins[2Fe-2S] clusterferredoxinforce fieldmetalloproteinmolecular dynamics simulation

Identifiers

PMID36555561
PMCPMC9782105
OpenAlexW4311511313

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.