Evidence map›Paper›PMID 36554151›Full record

ArticleEntropy (Basel, Switzerland)2022

Cancer Segmentation by Entropic Analysis of Ordered Gene Expression Profiles.

Ania Mesa-Rodríguez, Augusto Gonzalez, Ernesto Estevez-Rams, Pedro A Valdes-Sosa

Abstract read
In one paragraph

Article in Entropy (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ania Mesa-RodríguezThe Clinical Hospital of Chengdu Brain Science Institute, University of Electronic Sciences and Technology of China, Chengdu 610054, China.ORCID 0000-0001-9651-146X
Augusto GonzalezThe Clinical Hospital of Chengdu Brain Science Institute, University of Electronic Sciences and Technology of China, Chengdu 610054, China.ORCID 0000-0002-2367-6113
Ernesto Estevez-RamsFacultad de Física, Instituto de Ciencias y Tecnología de Materiales (IMRE), Universidad de La Habana, San Lazaro y L, La Habana 10400, Cuba.ORCID 0000-0002-9062-572X
Pedro A Valdes-SosaThe Clinical Hospital of Chengdu Brain Science Institute, University of Electronic Sciences and Technology of China, Chengdu 610054, China.ORCID 0000-0001-5485-2661

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The availability of massive gene expression data has been challenging in terms of how to cure, process, and extract useful information. Here, we describe the use of entropic measures as discriminating criteria in cancer using the whole data set of gene expression levels. These methods were applied in classifying samples between tumor and normal type for 13 types of tumors with a high success ratio. Using gene expression, ordered by pathways, results in complexity-entropy diagrams. The map allows the clustering of the tumor and normal types samples, with a high success rate for nine of the thirteen, studied cancer types. Further analysis using information distance also shows good discriminating behavior, but, more importantly, allows for discriminating between cancer types. Together, our results allow the classification of tissues without the need to identify relevant genes or impose a particular cancer model. The used procedure can be extended to classification problems beyond the reported results.

Indexed as

gene expressioninformation distanceShannon entropytumor discrimination

Identifiers

PMID36554151
PMCPMC9777913

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.