Evidence map›Paper›PMID 36553637›Full record

ArticleGenes2022

Proteomic and Transcriptomic Landscapes of Alström and Bardet-Biedl Syndromes.

Urszula Smyczynska, Marcin Stanczak, Miljan Kuljanin, Aneta Włodarczyk, Ewelina Stoczynska-Fidelus, Joanna Taha, Bartłomiej Pawlik, Maciej Borowiec, Joseph D Mancias, Wojciech Mlynarski and 3 more

Open access · goldAbstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. The hope, hype and obstacles surrounding cell therapy.Journal of cellular and molecular medicine · 2024
    Review
  5. Review
  6. Posttranslational modifications of proteins in diseased retina.Frontiers in cellular neuroscience · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Urszula SmyczynskaDepartment of Biostatistics and Translational Medicine, Medical University of Lodz, 92-215 Lodz, Poland.ORCID 0000-0003-1399-457X
Marcin StanczakDepartment of Biostatistics and Translational Medicine, Medical University of Lodz, 92-215 Lodz, Poland.
Miljan KuljaninDepartment of Radiation Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Aneta WłodarczykDepartment of Tumor Biology, Medical University of Lodz, 90-752 Lodz, Poland.
Ewelina Stoczynska-FidelusDepartment of Molecular Biology, Medical University of Lodz, 90-752 Lodz, Poland.
Joanna TahaCentral Laboratory for Genetic Research in Pediatric Oncology "Oncolab", Medical University of Lodz, 90-752 Lodz, Poland.
Bartłomiej PawlikDepartment of Pediatrics, Oncology and Hematology, Medical University of Lodz, 90-752 Lodz, Poland.ORCID 0000-0002-8803-1033
Maciej BorowiecDepartment of Clinical Genetics, Medical University of Lodz, 90-419 Lodz, Poland.
Joseph D ManciasDepartment of Radiation Oncology, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Wojciech MlynarskiDepartment of Pediatrics, Oncology and Hematology, Medical University of Lodz, 90-752 Lodz, Poland.ORCID 0000-0003-2714-5851
Piotr RieskeDepartment of Tumor Biology, Medical University of Lodz, 90-752 Lodz, Poland.ORCID 0000-0002-2970-0970
Wojciech FendlerDepartment of Biostatistics and Translational Medicine, Medical University of Lodz, 92-215 Lodz, Poland.
Agnieszka ZmysłowskaDepartment of Clinical Genetics, Medical University of Lodz, 90-419 Lodz, Poland.ORCID 0000-0001-8781-4469
Medical University of Lodz · PLDana-Farber Cancer Institute · USMedical University of Warsaw · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alström syndrome (ALMS) and Bardet-Biedl syndrome (BBS) are rare genetic diseases with a number of common clinical features ranging from early-childhood obesity and retinal degeneration. ALMS and BBS belong to the ciliopathies, which are known to have the expression products of genes, encoding them as cilia-localized proteins in multiple target organs. The aim of this study was to perform transcriptomic and proteomic analysis on cellular models of ALMS and BBS syndromes to identify common and distinct pathological mechanisms present in both syndromes. For this purpose, epithelial cells were isolated from the urine of patients and healthy subjects, which were then cultured and reprogrammed into induced pluripotent stem (iPS) cells. The pathways of genes associated with the metabolism of lipids and glycosaminoglycan and the transport of small molecules were found to be concomitantly downregulated in both diseases, while transcripts related to signal transduction, the immune system, cell cycle control and DNA replication and repair were upregulated. Furthermore, protein pathways associated with autophagy, apoptosis, cilium assembly and Gli1 protein were upregulated in both ciliopathies. These results provide new insights into the common and divergent pathogenic pathways between two similar genetic syndromes, particularly in relation to primary cilium function and abnormalities in cell differentiation.

Indexed as

Alstrom SyndromeBardet-Biedl SyndromeCiliopathiesPediatric ObesityChildHumansProteinsProteomicsTranscriptomeProteinsAlström syndromeBardet–Biedl syndromeciliaproteomicstranscriptomics

Identifiers

PMID36553637
PMCPMC9777683
OpenAlexW4311788440

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.