Evidence map›Paper›PMID 36553630›Full record

ArticleGenes2022

A Tet-Inducible CRISPR Platform for High-Fidelity Editing of Human Pluripotent Stem Cells.

Shawna L Jurlina, Melissa K Jones, Devansh Agarwal, Diana V De La Toba, Netra Kambli, Fei Su, Heather M Martin, Ryan Anderson, Ryan M Wong, Justin Seid and 3 more

Abstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
  6. Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Shawna L JurlinaViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.
Melissa K JonesViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.
Devansh AgarwalViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0001-8342-6119
Diana V De La TobaViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.
Netra KambliViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.
Fei SuViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.
Heather M MartinViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-8988-2446
Ryan AndersonViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.
Ryan M WongViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0001-8055-406X
Justin SeidViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.
Saisantosh V AttaluriViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-4666-0261
Melissa ChowViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-6501-3991
Karl J WahlinViterbi Family Department of Ophthalmology, Shiley Eye Institute, University of California San Diego, La Jolla, CA 92093, USA.ORCID 0000-0002-0494-8304

Funding

Vision BiostatisticsP30EY022589 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Radha Ayyagari · 2012 to 2026
$10.3M
Pluripotent Stem Cell Derived 3D Retinas for Studies of Early Onset Retinal DegenerationR01EY031318 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WAHLIN, KARL J · 2020 to 2024
$2.4M
Translational Vision Research Training at UCSDT32EY026590 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ZANGWILL, LINDA M · 2016 to 2025
$854k
Modeling Photoreceptor Development and Disease Using Human Pluripotent Stem CellsR00EY024648 · NEI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI WAHLIN, KARL J · 2016 to 2018
$778k
Dissecting the biochemical role of epigenetically modified regulatory sequences within the genomes of retinal neurons (A1)R15EY028725 · NEI · JAMES MADISON UNIVERSITY · PI ENKE, RAYMOND · 2018 to 2018
$464k
Modeling Photoreceptor Development and Disease Using Human Pluripotent Stem CellsK99EY024648 · NEI · JOHNS HOPKINS UNIVERSITY · PI WAHLIN, KARL J · 2014 to 2015
$180k
NEI NIH HHS K99 EY024648NEI NIH HHS P30 EY022589NEI NIH HHS R00 EY024648NEI NIH HHS R01 EY031318NEI NIH HHS R15 EY028725NEI NIH HHS T32 EY026590
6 · The paper itself

Abstract

Pluripotent stem cells (PSCs) offer an exciting resource for probing human biology; however, gene-editing efficiency remains relatively low in many cell types, including stem cells. Gene-editing using the CRISPR-Cas9 system offers an attractive solution that improves upon previous gene-editing approaches; however, like other technologies, off-target mutagenesis remains a concern. High-fidelity Cas9 variants greatly reduce off-target mutagenesis and offer a solution to this problem. To evaluate their utility as part of a cell-based gene-editing platform, human PSC lines were generated with a high-fidelity (HF) tetracycline-inducible engineered

Indexed as

CRISPR-Cas SystemsPluripotent Stem CellsDNA End-Joining RepairGene EditingHumansMutagenesisCas9CRISPRDTSgene-editingHDRhomology-directed repairiCas9stem celltransfection

Identifiers

PMID36553630
PMCPMC9777998

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.