Evidence map›Paper›PMID 36553514›Full record

ArticleGenes2022

Systematic Evaluation of Genomic Prediction Algorithms for Genomic Prediction and Breeding of Aquatic Animals.

Kuiqin Wang, Ben Yang, Qi Li, Shikai Liu

Open access · goldAbstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Deep learning for genomic selection of aquatic animals.Marine life science & technology · 2024
    Review
  4. Genomic selection for crop improvement in fruits and vegetables: a systematic scoping review.Molecular breeding : new strategies in plant improvement · 2024
    Article
  5. Review
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kuiqin WangKey Laboratory of Mariculture, Ministry of Education, College of Fisheries, Ocean University of China, Qingdao 266003, China.ORCID 0000-0002-5649-9715
Ben YangKey Laboratory of Mariculture, Ministry of Education, College of Fisheries, Ocean University of China, Qingdao 266003, China.
Qi LiKey Laboratory of Mariculture, Ministry of Education, College of Fisheries, Ocean University of China, Qingdao 266003, China.
Shikai LiuKey Laboratory of Mariculture, Ministry of Education, College of Fisheries, Ocean University of China, Qingdao 266003, China.ORCID 0000-0001-5777-489X
Ocean University of China · CNQingdao National Laboratory for Marine Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The extensive use of genomic selection (GS) in livestock and crops has led to a series of genomic-prediction (GP) algorithms despite the lack of a single algorithm that can suit all the species and traits. A systematic evaluation of available GP algorithms is thus necessary to identify the optimal GP algorithm for selective breeding in aquaculture species. In this study, a systematic comparison of ten GP algorithms, including both traditional and machine-learning algorithms, was conducted using publicly available genotype and phenotype data of eight traits, including weight and disease resistance traits, from five aquaculture species. The study aimed to provide insights into the optimal algorithm for GP in aquatic animals. Notably, no algorithm showed the best performance in all traits. However, reproducing kernel Hilbert space (RKHS) and support-vector machine (SVM) algorithms achieved relatively high prediction accuracies in most of the tested traits. Bayes A and random forest (RF) better prevented noise interference in the phenotypic data compared to the other algorithms. The prediction performances of GP algorithms in the

Indexed as

Genome-Wide Association StudyPlant BreedingAnimalsBayes TheoremGenomeGenomicsalgorithm comparisonaquatic animalsgenomic predictiongenomic selectionmachine learning

Identifiers

PMID36553514
PMCPMC9778314
OpenAlexW4310376398

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.