Evidence map›Paper›PMID 36553460›Full record

ArticleGenes2022

An Improved Bayesian Shrinkage Regression Algorithm for Genomic Selection.

Jin Zhang, Ling Li, Mingming Lv, Yidi Wang, Wenzhe Qiu, Yuan An, Ye Zhang, Yuxuan Wan, Yu Xu, Juncong Chen

Abstract read
In one paragraph

Article in Genes, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jin ZhangCollege of Science, Nanjing Agricultural University, Nanjing 210095, China.
Ling LiCollege of Science, Nanjing Agricultural University, Nanjing 210095, China.
Mingming LvCollege of Science, Nanjing Agricultural University, Nanjing 210095, China.
Yidi WangCollege of Science, Nanjing Agricultural University, Nanjing 210095, China.
Wenzhe QiuCollege of Science, Nanjing Agricultural University, Nanjing 210095, China.
Yuan AnCollege of Science, Nanjing Agricultural University, Nanjing 210095, China.
Ye ZhangCollege of Science, Nanjing Agricultural University, Nanjing 210095, China.
Yuxuan WanSchool of Business Administration, Jiangxi University of Finance and Economics, Nanchang 330013, China.
Yu XuFreshwater Fisheries Research Institute of Jiangsu Province, Nanjing 210017, China.
Juncong ChenCollege of Finance, Nanjing Agricultural University, Nanjing 210095, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Currently a hot topic, genomic selection (GS) has consistently provided powerful support for breeding studies and achieved more comprehensive and reliable selection in animal and plant breeding. GS estimates the effects of all single nucleotide polymorphisms (SNPs) and thereby predicts the genomic estimation of breeding value (GEBV), accelerating breeding progress and overcoming the limitations of conventional breeding. The successful application of GS primarily depends on the accuracy of the GEBV. Adopting appropriate advanced algorithms to improve the accuracy of the GEBV is time-saving and efficient for breeders, and the available algorithms can be further improved in the big data era. In this study, we develop a new algorithm under the Bayesian Shrinkage Regression (BSR, which is called BayesA) framework, an improved expectation-maximization algorithm for BayesA (emBAI). The emBAI algorithm first corrects the polygenic and environmental noise and then calculates the GEBV by emBayesA. We conduct two simulation experiments and a real dataset analysis for flowering time-related

Indexed as

ArabidopsisAlgorithmsAnimalsBayes TheoremGenomicsModels, GeneticPlant BreedingBayesianGEBVgenomic selectionmixed linear modelpolygenic background

Identifiers

PMID36553460
PMCPMC9778053

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.