Evidence map›Paper›PMID 36553188›Full record

ArticleDiagnostics (Basel, Switzerland)2022

Hamlet-Pattern-Based Automated COVID-19 and Influenza Detection Model Using Protein Sequences.

Mehmet Erten, Madhav R Acharya, Aditya P Kamath, Niranjana Sampathila, G Muralidhar Bairy, Emrah Aydemir, Prabal Datta Barua, Mehmet Baygin, Ilknur Tuncer, Sengul Dogan and 1 more

Abstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. COVID-19 diagnosis utilizing wavelet-based contrastive learning with chest CT images.Chemometrics and intelligent laboratory systems : an international journal sponsored by the Chemometrics Society · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Mehmet ErtenLaboratory of Medical Biochemistry, Malatya Training and Research Hospital, 44000 Malatya, Turkey.ORCID 0000-0002-6664-4568
Madhav R AcharyaDepartment of Biomedical Engineering, Manipal Academy of Higher Education, Manipal 04478, India.
Aditya P KamathCenter for Biomedical Engineering, Brown University, Providence, RI 02912, USA.
Niranjana SampathilaDepartment of Biomedical Engineering, Manipal Academy of Higher Education, Manipal 04478, India.ORCID 0000-0002-3345-360X
G Muralidhar BairyDepartment of Biomedical Engineering, Manipal Academy of Higher Education, Manipal 04478, India.
Emrah AydemirDepartment of Management Information, College of Management, Sakarya University, 54050 Sakarya, Turkey.ORCID 0000-0002-8380-7891
Prabal Datta BaruaSchool of Management & Enterprise, University of Southern Queensland, Toowoomba, QLD 4350, Australia.ORCID 0000-0001-5117-8333
Mehmet BayginDepartment of Computer Engineering, Faculty of Engineering, Ardahan University, 75000 Ardahan, Turkey.ORCID 0000-0002-5258-754X
Ilknur TuncerElazig Governorship, Interior Ministry, 23119 Elazig, Turkey.
Sengul DoganDepartment of Digital Forensics Engineering, Technology Faculty, Firat University, 23119 Elazig, Turkey.ORCID 0000-0001-9677-5684
Turker TuncerDepartment of Digital Forensics Engineering, Technology Faculty, Firat University, 23119 Elazig, Turkey.ORCID 0000-0002-5126-6445

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SARS-CoV-2 and Influenza-A can present similar symptoms. Computer-aided diagnosis can help facilitate screening for the two conditions, and may be especially relevant and useful in the current COVID-19 pandemic because seasonal Influenza-A infection can still occur. We have developed a novel text-based classification model for discriminating between the two conditions using protein sequences of varying lengths. We downloaded viral protein sequences of SARS-CoV-2 and Influenza-A with varying lengths (all 100 or greater) from the NCBI database and randomly selected 16,901 SARS-CoV-2 and 19,523 Influenza-A sequences to form a two-class study dataset. We used a new feature extraction function based on a unique pattern, HamletPat, generated from the text of Shakespeare's

Indexed as

bioinformaticsHamlet Patternprotein sequence classificationSARS-CoV-2

Identifiers

PMID36553188
PMCPMC9777168

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.