Evidence map›Paper›PMID 36552850›Full record

ReviewCells2022

Visualizing the Genome: Experimental Approaches for Live-Cell Chromatin Imaging.

Vladimir S Viushkov, Nikolai A Lomov, Mikhail A Rubtsov, Yegor S Vassetzky

Open access · goldAbstract readReview
In one paragraph

Review in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. CRISPR/Cas-Based Techniques for Live-Cell Imaging and Bioanalysis.International journal of molecular sciences · 2023
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Vladimir S ViushkovDepartment of Molecular Biology, Faculty of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.
Nikolai A LomovDepartment of Molecular Biology, Faculty of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.ORCID 0000-0003-2101-3479
Mikhail A RubtsovDepartment of Molecular Biology, Faculty of Biology, Lomonosov Moscow State University, 119234 Moscow, Russia.
Yegor S VassetzkyCNRS UMR9018, Université Paris-Saclay, Gustave Roussy, 94805 Villejuif, France.ORCID 0000-0003-3101-7043
Lomonosov Moscow State University · RUCentre National de la Recherche Scientifique · FRSechenov University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Over the years, our vision of the genome has changed from a linear molecule to that of a complex 3D structure that follows specific patterns and possesses a hierarchical organization. Currently, genomics is becoming "four-dimensional": our attention is increasingly focused on the study of chromatin dynamics over time, in the fourth dimension. Recent methods for visualizing the movements of chromatin loci in living cells by targeting fluorescent proteins can be divided into two groups. The first group requires the insertion of a special sequence into the locus of interest, to which proteins that recognize the sequence are recruited (e.g., FROS and ParB-INT methods). In the methods of the second approach, "programmed" proteins are targeted to the locus of interest (i.e., systems based on CRISPR/Cas, TALE, and zinc finger proteins). In the present review, we discuss these approaches, examine their strengths and weaknesses, and identify the key scientific problems that can be studied using these methods.

Indexed as

ChromatinGenomeDiagnostic ImagingGenomicsChromatin3D genomechromatin dynamicschromatin visualizationCRISPR imagingFROSlive-cell imagingParB-INTTALE imagingzinc finger imaging

Identifiers

PMID36552850
PMCPMC9776900
OpenAlexW4312196041

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.