Evidence map›Paper›PMID 36551854›Full record

ReviewBiomedicines2022

Repeat Element Activation-Driven Inflammation: Role of NFκB and Implications in Normal Development and Cancer?

Baptiste Dumetier, Camille Sauter, Azadeh Hajmirza, Baptiste Pernon, Romain Aucagne, Cyril Fournier, Céline Row, Fabien Guidez, Cédric Rossi, Côme Lepage and 2 more

Open access · goldAbstract readReview
In one paragraph

Review in Biomedicines, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. The Roles of H3K9me3 Writers, Readers, and Erasers in Cancer Immunotherapy.International journal of molecular sciences · 2024
    Review
  6. Review
  7. Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Baptiste DumetierFaculty of Medicine, INSERM1231, University of Burgundy, 21000 Dijon, France.ORCID 0000-0001-9087-2344
Camille SauterFaculty of Medicine, INSERM1231, University of Burgundy, 21000 Dijon, France.
Azadeh HajmirzaInstitute for Research in Immunology and Cancer, Montreal, QC H3C 3J7, Canada.
Baptiste PernonFaculty of Medicine, INSERM1231, University of Burgundy, 21000 Dijon, France.
Romain AucagneFaculty of Medicine, INSERM1231, University of Burgundy, 21000 Dijon, France.ORCID 0000-0002-5644-3287
Cyril FournierFaculty of Medicine, INSERM1231, University of Burgundy, 21000 Dijon, France.
Céline RowFaculty of Medicine, INSERM1231, University of Burgundy, 21000 Dijon, France.
Fabien GuidezFaculty of Medicine, INSERM1231, University of Burgundy, 21000 Dijon, France.
Cédric RossiSchool of Medicine, Stanford University, Stanford, CA 94305, USA.
Côme LepageFaculty of Medicine, INSERM1231, University of Burgundy, 21000 Dijon, France.
Laurent DelvaFaculty of Medicine, INSERM1231, University of Burgundy, 21000 Dijon, France.
Mary B CallananFaculty of Medicine, INSERM1231, University of Burgundy, 21000 Dijon, France.
Inserm · FRInstitute for Research in Immunology and Cancer · CAStanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human genome is composed of unique DNA sequences that encode proteins and unique sequence noncoding RNAs that are essential for normal development and cellular differentiation. The human genome also contains over 50% of genome sequences that are repeat in nature (tandem and interspersed repeats) that are now known to contribute dynamically to genetic diversity in populations, to be transcriptionally active under certain physiological conditions, and to be aberrantly active in disease states including cancer, where consequences are pleiotropic with impact on cancer cell phenotypes and on the tumor immune microenvironment. Repeat element-derived RNAs play unique roles in exogenous and endogenous cell signaling under normal and disease conditions. A key component of repeat element-derived transcript-dependent signaling occurs via triggering of innate immune receptor signaling that then feeds forward to inflammatory responses through interferon and NFκB signaling. It has recently been shown that cancer cells display abnormal transcriptional activity of repeat elements and that this is linked to either aggressive disease and treatment failure or to improved prognosis/treatment response, depending on cell context and the amplitude of the so-called 'viral mimicry' response that is engaged. 'Viral mimicry' refers to a cellular state of active antiviral response triggered by endogenous nucleic acids often derived from aberrantly transcribed endogenous retrotransposons and other repeat elements. In this paper, the literature regarding transcriptional activation of repeat elements and engagement of inflammatory signaling in normal (focusing on hematopoiesis) and cancer is reviewed with an emphasis on the role of innate immune receptor signaling, in particular by dsRNA receptors of the RIG-1 like receptor family and interferons/NFκB. How repeat element-derived RNA reprograms cell identity through RNA-guided chromatin state modulation is also discussed.

Indexed as

histone H3 lysine 9 trimethylationimmune checkpoint blockadeinnate immunityp53repetitive elementsRNA-guided chromatin regulationsatellite repeatsviral mimicry

Identifiers

PMID36551854
PMCPMC9775655
OpenAlexW4311054707

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.