Evidence map›Paper›PMID 36551175›Full record

ArticleBiomolecules2022

Influence of Centrifugation and Shaking on the Self-Assembly of Lysozyme Fibrils.

Marzena Krzek, Sander Stroobants, Pierre Gelin, Wim De Malsche, Dominique Maes

Abstract read
In one paragraph

Article in Biomolecules, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Marzena KrzekStructural Biology Brussels, Vrije Universiteit Brussel, 1050 Brussels, Belgium.ORCID 0000-0002-0687-5209
Sander StroobantsStructural Biology Brussels, Vrije Universiteit Brussel, 1050 Brussels, Belgium.
Pierre GelinμFlow Group, Department of Chemical Engineering, Vrije Universiteit Brussel, 1050 Brussels, Belgium.ORCID 0000-0002-1684-0034
Wim De MalscheμFlow Group, Department of Chemical Engineering, Vrije Universiteit Brussel, 1050 Brussels, Belgium.ORCID 0000-0002-1955-7912
Dominique MaesStructural Biology Brussels, Vrije Universiteit Brussel, 1050 Brussels, Belgium.ORCID 0000-0002-9179-3186

Funding

Belgian Federal Science Policy Office ESA Prodex AO-2004-070European Research Council 679033EVODIS ERC-2015-STGVrije Universiteit Brussel SRP51
6 · The paper itself

Abstract

Protein self-assembly into fibrils and oligomers plays a key role in the etiology of degenerative diseases. Several pathways for this self-assembly process have been described and shown to result in different types and ratios of final assemblies, therewith defining the effective physiological response. Known factors that influence assembly pathways are chemical conditions and the presence or lack of agitation. However, in natural and industrial systems, proteins are exposed to a sequence of different and often complex mass transfers. In this paper, we compare the effect of two fundamentally different mass transfer processes on the fibrilization process. Aggregation-prone solutions of hen egg white lysozyme were subjected to predominantly non-advective mass transfer by employing centrifugation and to advective mass transport represented by orbital shaking. In both cases, fibrilization was triggered, while in quiescent only oligomers were formed. The fibrils obtained by shaking compared to fibrils obtained through centrifugation were shorter, thicker, and more rigid. They had rod-like protofibrils as building blocks and a significantly higher β-sheet content was observed. In contrast, fibrils from centrifugation were more flexible and braided. They consisted of intertwined filaments and had low β-sheet content at the expense of random coil. To the best of our knowledge, this is the first evidence of a fibrilization pathway selectivity, with the fibrilization route determined by the mass transfer and mixing configuration (shaking versus centrifugation). This selectivity can be potentially employed for directed protein fibrilization.

Indexed as

AmyloidMuramidaseCentrifugationAmyloidMuramidasecentrifugationfibrilizationhypergravitymass transferoligomersprotein self-assemblyshaking

Identifiers

PMID36551175
PMCPMC9775142

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.