ArticleNature communications2022
Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure.
Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.
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Who cites it
21 citing papers in PubMed, 49 citations in OpenAlex.
- Salinity-driven niche partitioning of aquatic viruses in one of Europe's largest estuaries.Applied and environmental microbiology · 2026Article
- Sub-daily virus sampling at the Bermuda Atlantic Time Series reveals diel and depth-structured population dynamics without community-level shifts.PLoS biology · 2026Article
- Chlorophyll a gradients shift heterotrophic bacterial assembly from dispersal limitation to biotic filtering of picophytoplankton.ISME communications · 2026Article
- Multi-domain temporal patterns reveal stable community membership but dynamic interactions in the coastal microbiome.Environmental microbiome · 2025Article
- Bidirectional subsethood of shared marker profiles enables accurate virus classification.Microbiome · 2025Article
- Characterizing organisms from three domains of life with universal primers from throughout the global ocean.Scientific data · 2025Article
- Climate-driven succession in marine microbiome biodiversity and biogeochemical function.Nature communications · 2025Article
- SAR11 ecotypes across ocean basins change with depth due to changes in light and oxygen.The ISME journal · 2025Article
- Particle partitioning and geography drive divergent microbial assembly and network connectivity in coastal South China Sea.Frontiers in microbiology · 2025Article
- Seasonal blooms ofFrontiers in microbiology · 2025Article
- Two decades of bacterial ecology and evolution in a freshwater lake.Nature microbiology · 2025Article
- Quantitative microbial taxonomy across particle size, depth, and oxygen concentration.Frontiers in microbiology · 2025Article
- Phylogenetic proximity is a key driver of temporal succession of marine giant viruses in a five-year metagenomic time-series.ISME communications · 2025Article
- Water-sediment regulation drives stage-specific microbial shifts and network complexity in the Yellow River reservoir-river continuum.Frontiers in microbiology · 2025Article
- Prophage induction drives soybean rhizobacterial community differentiation and nutrient cycling benefiting root development.ISME communications · 2025Article
- Nutrient colimitation is a quantitative, dynamic property of microbial populations.Proceedings of the National Academy of Sciences of the United States of America · 2024Article
- Seasonal and interannual variability of the free-living and particle-associated bacteria of a coastal microbiome.Environmental microbiology reports · 2024Article
- DeepMicroClass sorts metagenomic contigs into prokaryotes, eukaryotes and viruses.NAR genomics and bioinformatics · 2024Article
- Organelles in the ointment: improved detection of cryptic mitochondrial reads resolves many unknown sequences in cross-species microbiome analyses.ISME communications · 2024Article
- Selective cell lysis pressure on rare and abundant prokaryotic taxa across a shelf-to-slope continuum in the Northern South China Sea.Applied and environmental microbiology · 2023Article
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Authors and funding
2 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Free-living and particle-associated marine prokaryotes have physiological, genomic, and phylogenetic differences, yet factors influencing their temporal dynamics remain poorly constrained. In this study, we quantify the entire microbial community composition monthly over several years, including viruses, prokaryotes, phytoplankton, and total protists, from the San-Pedro Ocean Time-series using ribosomal RNA sequencing and viral metagenomics. Canonical analyses show that in addition to physicochemical factors, the double-stranded DNA viral community is the strongest factor predicting free-living prokaryotes, explaining 28% of variability, whereas the phytoplankton (via chloroplast 16S rRNA) community is strongest with particle-associated prokaryotes, explaining 31% of variability. Unexpectedly, protist community explains little variability. Our findings suggest that biotic interactions are significant determinants of the temporal dynamics of prokaryotes, and the relative importance of specific interactions varies depending on lifestyles. Also, warming influenced the prokaryotic community, which largely remained oligotrophic summer-like throughout 2014-15, with cyanobacterial populations shifting from cold-water ecotypes to warm-water ecotypes.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.