Evidence map›Paper›PMID 36545262›Full record

ArticleOphthalmology science2023

RimNet: A Deep Neural Network Pipeline for Automated Identification of the Optic Disc Rim.

Haroon Adam Rasheed, Tyler Davis, Esteban Morales, Zhe Fei, Lourdes Grassi, Agustina De Gainza, Kouros Nouri-Mahdavi, Joseph Caprioli

Open access · goldAbstract read
In one paragraph

Article in Ophthalmology science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Haroon Adam RasheedDavid Geffen School of Medicine, University of California Los Angeles, Los Angeles, California.
Tyler DavisDepartment of Computer Science, University of California Los Angeles, Los Angeles, California.
Esteban MoralesGlaucoma Division, Jules Stein Eye Institute, Los Angeles, California.
Zhe FeiJonathan and Karin Fielding School of Public Health, University of California Los Angeles, Los Angeles, California.
Lourdes GrassiGlaucoma Division, Jules Stein Eye Institute, Los Angeles, California.
Agustina De GainzaGlaucoma Division, Jules Stein Eye Institute, Los Angeles, California.
Kouros Nouri-MahdaviGlaucoma Division, Jules Stein Eye Institute, Los Angeles, California.
Joseph CaprioliGlaucoma Division, Jules Stein Eye Institute, Los Angeles, California.
University of California, Los Angeles · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: Accurate neural rim measurement based on optic disc imaging is important to glaucoma severity grading and often performed by trained glaucoma specialists. We aim to improve upon existing automated tools by building a fully automated system (RimNet) for direct rim identification in glaucomatous eyes and measurement of the minimum rim-to-disc ratio (mRDR) in intact rims, the angle of absent rim width (ARW) in incomplete rims, and the rim-to-disc-area ratio (RDAR) with the goal of optic disc damage grading. Design: Retrospective cross sectional study. Participants: One thousand and twenty-eight optic disc photographs with evidence of glaucomatous optic nerve damage from 1021 eyes of 903 patients with any form of primary glaucoma were included. The mean age was 63.7 (± 14.9) yrs. The average mean deviation of visual fields was -8.03 (± 8.59). Methods: The images were required to be of adequate quality, have signs of glaucomatous damage, and be free of significant concurrent pathology as independently determined by glaucoma specialists. Rim and optic cup masks for each image were manually delineated by glaucoma specialists. The database was randomly split into 80/10/10 for training, validation, and testing, respectively. RimNet consists of a deep learning rim and cup segmentation model, a computer vision mRDR measurement tool for intact rims, and an ARW measurement tool for incomplete rims. The mRDR is calculated at the thinnest rim section while ARW is calculated in regions of total rim loss. The RDAR was also calculated. Evaluation on the Drishti-GS dataset provided external validation (Sivaswamy 2015). Main Outcome Measures: Median Absolute Error (MAE) between glaucoma specialists and RimNet for mRDR and ARW. Results: On the test set, RimNet achieved a mRDR MAE of 0.03 (0.05), ARW MAE of 31 (89)°, and an RDAR MAE of 0.09 (0.10). On the Drishti-GS dataset, an mRDR MAE of 0.03 (0.04) and an mRDAR MAE of 0.09 (0.10) was observed. Conclusions: RimNet demonstrated acceptably accurate rim segmentation and mRDR and ARW measurements. The fully automated algorithm presented here would be a valuable component in an automated mRDR-based glaucoma grading system. Further improvements could be made by improving identification and segmentation performance on incomplete rims and expanding the number and variety of glaucomatous training images.

Indexed as

ARW, absent rim widthCDR, cup-to-disc-ratioCupDice, Dice score of the optic cupCupIoU, IoU of the optic cupDDLSDDLS, disc damage likelihood scaleDiscDice, dice score of the optic discDiscIoU, IoU of the optic discGlaucomaIoU, intersection over unionIQR, interquartile rangeMAE, median average errormRDRmRDR, minimum rim-to-disc ratioNeural networkRDAR, rim to disc area ratioSegmentation

Identifiers

PMID36545262
PMCPMC9762186
OpenAlexW4308102080

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.