Evidence map›Paper›PMID 36545146›Full record

ArticleChemical science2022

A carbapenem antibiotic inhibiting a mammalian serine protease: structure of the acylaminoacyl peptidase-meropenem complex.

Anna J Kiss-Szemán, Luca Takács, Zoltán Orgován, Pál Stráner, Imre Jákli, Gitta Schlosser, Simonas Masiulis, Veronika Harmat, Dóra K Menyhárd, András Perczel

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Anna J Kiss-SzemánLaboratory of Structural Chemistry and Biology, Institute of Chemistry, Eötvös Loránd University Pázmány Péter sétány 1/A Budapest Hungary.ORCID https://orcid.org/0000-0002-3039-0324
Luca TakácsLaboratory of Structural Chemistry and Biology, Institute of Chemistry, Eötvös Loránd University Pázmány Péter sétány 1/A Budapest Hungary.ORCID https://orcid.org/0000-0002-4864-8872
Zoltán OrgovánMedicinal Chemistry Research Group, Research Centre for Natural Sciences Budapest Hungary.
Pál StránerELKH-ELTE Protein Modelling Research Group, Eötvös Loránd Research Network Budapest Hungary dora.k.menyhard@ttk.elte.hu perczel.andras@ttk.elte.hu veronika.harmat@ttk.elte.hu +36-1-372-2500/1653 +36-1-372-2500/6547.
Imre JákliLaboratory of Structural Chemistry and Biology, Institute of Chemistry, Eötvös Loránd University Pázmány Péter sétány 1/A Budapest Hungary.
Gitta SchlosserELKH-ELTE Lendület Ion Mobility Mass Spectrometry Research Group, Institute of Chemistry, Eötvös Loránd University Budapest Hungary.
Simonas MasiulisMaterials and Structural Analysis Division, Thermo Fisher Scientific Eindhoven The Netherlands.
Veronika HarmatLaboratory of Structural Chemistry and Biology, Institute of Chemistry, Eötvös Loránd University Pázmány Péter sétány 1/A Budapest Hungary.ORCID https://orcid.org/0000-0002-1866-9904
Dóra K MenyhárdLaboratory of Structural Chemistry and Biology, Institute of Chemistry, Eötvös Loránd University Pázmány Péter sétány 1/A Budapest Hungary.ORCID https://orcid.org/0000-0002-0095-5531
András PerczelLaboratory of Structural Chemistry and Biology, Institute of Chemistry, Eötvös Loránd University Pázmány Péter sétány 1/A Budapest Hungary.ORCID https://orcid.org/0000-0003-1252-6416
Eötvös Loránd University · HUHUN-REN Research Centre for Natural Sciences · HUThermo Fisher Scientific (Netherlands) · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The structure of porcine AAP (pAAP) in a covalently bound complex with meropenem was determined by cryo-EM to 2.1 Å resolution, showing the mammalian serine-protease inhibited by a carbapenem antibiotic. AAP is a modulator of the ubiquitin-proteasome degradation system and the site of a drug-drug interaction between the widely used antipsychotic, valproate and carbapenems. The active form of pAAP - a toroidal tetramer - binds four meropenem molecules covalently linked to the catalytic Ser587 of the serine-protease triad, in an acyl-enzyme state. AAP is hindered from fully processing the antibiotic by the displacement and protonation of His707 of the catalytic triad. We show that AAP is made susceptible to the association by its unusually sheltered active pockets and flexible catalytic triads, while the carbapenems possess sufficiently small substituents on their β-lactam rings to fit into the shallow substrate-specificity pocket of the enzyme.

Identifiers

PMID36545146
PMCPMC9749117
OpenAlexW4312114443

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.