Evidence map›Paper›PMID 36544717›Full record

ReviewChemical science2022

Data storage architectures to accelerate chemical discovery: data accessibility for individual laboratories and the community.

Rebekah Duke, Vinayak Bhat, Chad Risko

Abstract readReview
In one paragraph

Review in Chemical science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Conjugated Polymer Process Ontology and Experimental Data Repository for Organic Field-Effect Transistors.Chemistry of materials : a publication of the American Chemical Society · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Rebekah DukeDepartment of Chemistry & Center for Applied Energy Research, University of Kentucky Lexington 40506 Kentucky USA chad.risko@uky.edu.ORCID https://orcid.org/0000-0002-2659-552X
Vinayak BhatDepartment of Chemistry & Center for Applied Energy Research, University of Kentucky Lexington 40506 Kentucky USA chad.risko@uky.edu.ORCID https://orcid.org/0000-0003-0736-3499
Chad RiskoDepartment of Chemistry & Center for Applied Energy Research, University of Kentucky Lexington 40506 Kentucky USA chad.risko@uky.edu.ORCID https://orcid.org/0000-0001-9838-5233

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

As buzzwords like "big data," "machine learning," and "high-throughput" expand through chemistry, chemists need to consider more than ever their data storage, data management, and data accessibility, whether in their own laboratories or with the broader community. While it is commonplace for chemists to use spreadsheets for data storage and analysis, a move towards database architectures ensures that the data can be more readily findable, accessible, interoperable, and reusable (FAIR). However, making this move has several challenges for those with limited-to-no knowledge of computer programming and databases. This Perspective presents basics of data management using databases with a focus on chemical data. We overview database fundamentals by exploring benefits of database use, introducing terminology, and establishing database design principles. We then detail the extract, transform, and load process for database construction, which includes an overview of data parsing and database architectures, spanning Standard Query Language (SQL) and No-SQL structures. We close by cataloging overarching challenges in database design. This Perspective is accompanied by an interactive demonstration available at https://github.com/D3TaLES/databases_demo. We do all of this within the context of chemical data with the aim of equipping chemists with the knowledge and skills to store, manage, and share their data while abiding by FAIR principles.

Identifiers

PMID36544717
PMCPMC9710231

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.