Evidence map›Paper›PMID 36544572›Full record

ArticleRSC chemical biology2022

Chemoproteomic mapping of human milk oligosaccharide (HMO) interactions in cells.

Abdullah A Hassan, Jacob M Wozniak, Zak Vilen, Weichao Li, Appaso Jadhav, Christopher G Parker, Mia L Huang

Open access · goldAbstract read
In one paragraph

Article in RSC chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Abdullah A HassanDepartment of Molecular Medicine, Scripps Research, 10550 N Torrey Pines Rd. La Jolla CA 92037 USA miahuang@scripps.edu.ORCID https://orcid.org/0000-0002-7143-6122
Jacob M WozniakDepartment of Chemistry, Scripps Research, 10550 N Torrey Pines Rd. La Jolla CA 92037 USA cparker@scripps.edu.
Zak VilenDepartment of Molecular Medicine, Scripps Research, 10550 N Torrey Pines Rd. La Jolla CA 92037 USA miahuang@scripps.edu.
Weichao LiDepartment of Molecular Medicine, Scripps Research, 10550 N Torrey Pines Rd. La Jolla CA 92037 USA miahuang@scripps.edu.ORCID https://orcid.org/0000-0001-6875-7315
Appaso JadhavDepartment of Chemistry, Scripps Research, 10550 N Torrey Pines Rd. La Jolla CA 92037 USA cparker@scripps.edu.ORCID https://orcid.org/0000-0002-4892-0792
Christopher G ParkerDepartment of Chemistry, Scripps Research, 10550 N Torrey Pines Rd. La Jolla CA 92037 USA cparker@scripps.edu.ORCID https://orcid.org/0000-0001-8509-9289
Mia L HuangDepartment of Molecular Medicine, Scripps Research, 10550 N Torrey Pines Rd. La Jolla CA 92037 USA miahuang@scripps.edu.ORCID https://orcid.org/0000-0001-9909-9554
Scripps Institution of Oceanography · US

Funding

PATHOGENESIS AND IMMUNOLOGY OF DISEASET32AI007244 · NIAID · SCRIPPS RESEARCH INSTITUTE, THE · PI NEMAZEE, DAVID · 1985 to 2022
$8.8M
Bridging the Glycome and Proteome with Chemical BiologyR35GM142462 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI Mia L Huang · 2021 to 2026
$2.9M
NIAID NIH HHS T32 AI007244NIGMS NIH HHS R35 GM142462
6 · The paper itself

Abstract

Human milk oligosaccharides (HMOs) are a family of unconjugated soluble glycans found in human breast milk that exhibit a myriad of biological activity. While recent studies have uncovered numerous biological functions for HMOs (antimicrobial, anti-inflammatory & probiotic properties), the receptors and protein binding partners involved in these processes are not well characterized. This can be attributed largely in part to the low affinity and transient nature of soluble glycan-protein interactions, precluding the use of traditional characterization techniques to survey binding partners in live cells. Here, we present the use of synthetic photoactivatable HMO probes to capture, enrich and identify HMO protein targets in live cells using mass spectrometry-based chemoproteomics. Following initial validation studies using purified lectins, we profiled the targets of HMO probes in live mouse macrophages. Using this strategy, we mapped hundreds of HMO binding partners across multiple cellular compartments, including many known glycan-binding proteins as well as numerous proteins previously not known to bind glycans. We expect our findings to inform future investigations of the diverse roles of how HMOs may regulate protein function.

Identifiers

PMID36544572
PMCPMC9709932
OpenAlexW4312114834

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.