Evidence map›Paper›PMID 36544228›Full record

ArticleEnvironmental microbiome2022

Microbiome and metagenomic analysis of Lake Hillier Australia reveals pigment-rich polyextremophiles and wide-ranging metabolic adaptations.

Maria A Sierra, Krista A Ryon, Braden T Tierney, Jonathan Foox, Chandrima Bhattacharya, Evan Afshin, Daniel Butler, Stefan J Green, W Kelley Thomas, Jordan Ramsdell and 4 more

Abstract read
In one paragraph

Article in Environmental microbiome, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. RefiningMicrobial genomics · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Maria A Sierra *Tri-Institutional Computational Biology and Medicine Program, Weill Cornell Medicine, New York, NY, USA.
Krista A Ryon *The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Braden T Tierney *The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Jonathan FooxThe HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Chandrima BhattacharyaTri-Institutional Computational Biology and Medicine Program, Weill Cornell Medicine, New York, NY, USA.
Evan AfshinThe HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, 10065, USA.
Daniel ButlerDepartment of Physiology and Biophysics, Weill Cornell Medicine, New York, NY, 10065, USA.
Stefan J GreenGenomics and Microbiome Core Facility, Rush University, New York, IL, USA.
W Kelley ThomasDepartment of Molecular, Cellular, and Biomedical Sciences, College of Life Sciences and Agriculture, University of New Hampshire, Durham, NH, USA.
Jordan RamsdellBioTeam, Inc., Middleton, MA, USA.
Nathan J BivensDNA Core Facility, University of Missouri, Columbia, MO, USA.
Ken McGrathMicroba, Brisbane City, QLD, Australia.
Christopher E MasonThe HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine, Weill Cornell Medicine, New York, NY, 10065, USA. chm2042@med.cornell.edu.
Scott W TigheAdvanced Genomics Laboratory, University of Vermont Cancer Center, University of Vermont, Burlington, VT, USA. scott.tighe@uvm.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lake Hillier is a hypersaline lake known for its distinctive bright pink color. The cause of this phenomenon in other hypersaline sites has been attributed to halophiles, Dunaliella, and Salinibacter, however, a systematic analysis of the microbial communities, their functional features, and the prevalence of pigment-producing-metabolisms has not been previously studied. Through metagenomic sequencing and culture-based approaches, our results evidence that Lake Hillier is composed of a diverse set of microorganisms including archaea, bacteria, algae, and viruses. Our data indicate that the microbiome in Lake Hillier is composed of multiple pigment-producer microbes, including Dunaliella, Salinibacter, Halobacillus, Psychroflexus, Halorubrum, many of which are cataloged as polyextremophiles. Additionally, we estimated the diversity of metabolic pathways in the lake and determined that many of these are related to pigment production. We reconstructed complete or partial genomes for 21 discrete bacteria (N = 14) and archaea (N = 7), only 2 of which could be taxonomically annotated to previously observed species. Our findings provide the first metagenomic study to decipher the source of the pink color of Australia's Lake Hillier. The study of this pink hypersaline environment is evidence of a microbial consortium of pigment producers, a repertoire of polyextremophiles, a core microbiome and potentially novel species.

Indexed as

Biosynthetic Gene ClusterHillier LakeHypersaline lakeMetagenomicsMicrobiomePigmentsPolyextremophile

Identifiers

PMID36544228
PMCPMC9768965

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.