Evidence map›Paper›PMID 36543776›Full record

ArticleNature communications2022

Machine learning assisted interferometric structured illumination microscopy for dynamic biological imaging.

Edward N Ward, Lisa Hecker, Charles N Christensen, Jacob R Lamb, Meng Lu, Luca Mascheroni, Chyi Wei Chung, Anna Wang, Christopher J Rowlands, Gabriele S Kaminski Schierle and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
6.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Edward N WardDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.ORCID 0000-0002-9078-9716
Lisa HeckerDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.
Charles N ChristensenDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.
Jacob R LambDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.
Meng LuDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.
Luca MascheroniDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.
Chyi Wei ChungDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.ORCID 0000-0003-1780-3486
Anna WangDepartment of Physics, Oxford University, Oxford, UK.ORCID 0000-0002-8308-809X
Christopher J RowlandsDepartment of Bioengineering, Imperial College London, London, UK.ORCID 0000-0002-8261-2371
Gabriele S Kaminski SchierleDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.ORCID 0000-0002-1843-2202
Clemens F KaminskiDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK. cfk23@cam.ac.uk.ORCID 0000-0002-5194-0962
University of Cambridge · GBImperial College London · GBUniversity of Oxford · GB

Funding

Medical Research Council MR/K015850/1Medical Research Council MR/K02292X/1Wellcome TrustWellcome Trust 089703/Z/09/ZWellcome Trust 3-3249/Z/16/Z
6 · The paper itself

Abstract

Structured Illumination Microscopy, SIM, is one of the most powerful optical imaging methods available to visualize biological environments at subcellular resolution. Its limitations stem from a difficulty of imaging in multiple color channels at once, which reduces imaging speed. Furthermore, there is substantial experimental complexity in setting up SIM systems, preventing a widespread adoption. Here, we present Machine-learning Assisted, Interferometric Structured Illumination Microscopy, MAI-SIM, as an easy-to-implement method for live cell super-resolution imaging at high speed and in multiple colors. The instrument is based on an interferometer design in which illumination patterns are generated, rotated, and stepped in phase through movement of a single galvanometric mirror element. The design is robust, flexible, and works for all wavelengths. We complement the unique properties of the microscope with an open source machine-learning toolbox that permits real-time reconstructions to be performed, providing instant visualization of super-resolved images from live biological samples.

Indexed as

LightingMachine LearningInterferometryMicroscopy, Fluorescence

Identifiers

PMID36543776
PMCPMC9772218
OpenAlexW4312042304

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.