Evidence map›Paper›PMID 36543165›Full record

ArticleCell reports2022

SARS-CoV-2 escapes direct NK cell killing through Nsp1-mediated downregulation of ligands for NKG2D.

Madeline J Lee, Michelle W Leong, Arjun Rustagi, Aimee Beck, Leiping Zeng, Susan Holmes, Lei S Qi, Catherine A Blish

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
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  7. Review
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  11. NK-cell receptor modulation in viral infections.Clinical and experimental immunology · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. COVID-19 Biogenesis and Intracellular Transport.International journal of molecular sciences · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Madeline J LeeStanford Immunology Program, Stanford University School of Medicine, Stanford, CA 94305, USA; Department of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
Michelle W LeongDepartment of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
Arjun RustagiDepartment of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
Aimee BeckDepartment of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA.
Leiping ZengDepartment of Bioengineering, Stanford University, Stanford, CA 94305, USA.
Susan HolmesDepartment of Statistics, Stanford University, Stanford, CA 94305, USA.
Lei S QiDepartment of Bioengineering, Stanford University, Stanford, CA 94305, USA; Sarafan Chem-H, Stanford University, Stanford, CA 94305, USA; Chan Zuckerberg Biohub, San Francisco, CA 94157, USA.
Catherine A BlishDepartment of Medicine, Stanford University School of Medicine, Stanford, CA 94305, USA; Chan Zuckerberg Biohub, San Francisco, CA 94157, USA; Stanford Medical Scientist Training Program, Stanford University School of Medicine, Stanford, CA 94305, USA. Electronic address: cblish@stanford.edu.
Stanford University · USChan Zuckerberg Initiative (United States) · USStanford Medicine · US

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
MOLECULAR &CELLULAR IMMUNOBIOLOGYT32AI007290 · NIAID · STANFORD UNIVERSITY · PI Sean Curtis Bendall, Olivia M Martinez · 1985 to 2026
$27.0M
EMERGING INFECTIOUS DISEASEST32AI007502 · NIAID · STANFORD UNIVERSITY · PI Prasanna Jagannathan, DAVID A. RELMAN · 1995 to 2026
$6.8M
Modeling early SARS-CoV-2 pathogenesis in human lung organoids and slice culturesK08AI163369 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI RUSTAGI, ARJUN · 2022 to 2025
$772k
Defining the role of natural killer cells in COVID-19F31AI172319 · NIAID · STANFORD UNIVERSITY · PI LEE, MADELINE JANE · 2022 to 2024
$99k
NIAID NIH HHS F31 AI172319NIAID NIH HHS K08 AI163369NIAID NIH HHS T32 AI007290NIAID NIH HHS T32 AI007502NIAID NIH HHS U19 AI057229
6 · The paper itself

Abstract

Natural killer (NK) cells are cytotoxic effector cells that target and lyse virally infected cells; many viruses therefore encode mechanisms to escape such NK cell killing. Here, we interrogate the ability of SARS-CoV-2 to modulate NK cell recognition and lysis of infected cells. We find that NK cells exhibit poor cytotoxic responses against SARS-CoV-2-infected targets, preferentially killing uninfected bystander cells. We demonstrate that this escape is driven by downregulation of ligands for the activating receptor NKG2D (NKG2D-L). Indeed, early in viral infection, prior to NKG2D-L downregulation, NK cells are able to target and kill infected cells; however, this ability is lost as viral proteins are expressed. Finally, we find that SARS-CoV-2 non-structural protein 1 (Nsp1) mediates downregulation of NKG2D-L and that Nsp1 alone is sufficient to confer resistance to NK cell killing. Collectively, our work demonstrates that SARS-CoV-2 evades direct NK cell cytotoxicity and describes a mechanism by which this occurs.

Indexed as

COVID-19NK Cell Lectin-Like Receptor Subfamily KSARS-CoV-2Viral Nonstructural ProteinsCell DeathDown-RegulationHumansKiller Cells, NaturalLigandsKLRK1 protein, humanLigandsNK Cell Lectin-Like Receptor Subfamily KORF1ab polyprotein, SARS-CoV-2Viral Nonstructural Proteinsantiviral immunityCOVID-19CP: ImmunologyCP: Microbiologyimmune escapeinnate immunitynatural killer cellsNK cellsNKG2DNsp1SARS-CoV-2

Identifiers

PMID36543165
PMCPMC9742201
OpenAlexW4312084917

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.