Evidence map›Paper›PMID 36542713›Full record

ArticleScience advances2022

Mechanisms of DNA opening revealed in AAA+ transcription complex structures.

Fuzhou Ye, Forson Gao, Xiaojiao Liu, Martin Buck, Xiaodong Zhang

Abstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Real-time capture of σNature communications · 2025
    Article
  2. Article
  3. PApplied and environmental microbiology · 2025
    Article
  4. Subunit specialization in AAA+ proteins and substrate unfolding during transcription complex remodeling.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  5. Article
  6. Article
  7. Transcription activation inEcoSal Plus · 2024
    Review
  8. Article
  9. Article
  10. Structural basis of σProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. Structures of theProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  13. A general mechanism for transcription bubble nucleation in bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Fuzhou YeSection of Structural and Synthetic Biology, Department of Infectious Disease, Faculty of Medicine, Imperial College London, South Kensington SW7 2AZ, UK.ORCID 0000-0003-4724-1533
Forson GaoSection of Structural and Synthetic Biology, Department of Infectious Disease, Faculty of Medicine, Imperial College London, South Kensington SW7 2AZ, UK.ORCID 0000-0002-5404-3597
Xiaojiao LiuSection of Structural and Synthetic Biology, Department of Infectious Disease, Faculty of Medicine, Imperial College London, South Kensington SW7 2AZ, UK.
Martin BuckDepartment of Life Sciences, Imperial College London, South Kensington SW7 2AZ, UK.
Xiaodong ZhangSection of Structural and Synthetic Biology, Department of Infectious Disease, Faculty of Medicine, Imperial College London, South Kensington SW7 2AZ, UK.ORCID 0000-0001-9786-7038

Funding

Medical Research Council MR/P007503/1
6 · The paper itself

Abstract

Gene transcription is carried out by RNA polymerase (RNAP) and requires the conversion of the initial closed promoter complex, where DNA is double stranded, to a transcription-competent open promoter complex, where DNA is opened up. In bacteria, RNAP relies on σ factors for its promoter specificities. Using a special form of sigma factor (σ

Indexed as

DNADNA-Directed RNA PolymerasesCryoelectron MicroscopyPromoter Regions, GeneticRNA Polymerase Sigma 54Transcription, GeneticDNADNA-Directed RNA PolymerasesRNA Polymerase Sigma 54

Identifiers

PMID36542713
PMCPMC9770992

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.