Evidence map›Paper›PMID 36542058›Full record

ArticleeLife2022

Senataxin and RNase H2 act redundantly to suppress genome instability during class switch recombination.

Hongchang Zhao, Stella R Hartono, Kirtney Mae Flores de Vera, Zheyuan Yu, Krishni Satchi, Tracy Zhao, Roger Sciammas, Lionel Sanz, Frédéric Chédin, Jacqueline Barlow

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Hongchang ZhaoDepartment of Microbiology and Molecular Genetics, University of California, Davis, Davis, United States.
Stella R HartonoDepartment of Molecular and Cellular Biology, University of California, Davis, Davis, United States.
Kirtney Mae Flores de VeraDepartment of Microbiology and Molecular Genetics, University of California, Davis, Davis, United States.
Zheyuan YuDepartment of Microbiology and Molecular Genetics, University of California, Davis, Davis, United States.
Krishni SatchiDepartment of Microbiology and Molecular Genetics, University of California, Davis, Davis, United States.
Tracy ZhaoDepartment of Microbiology and Molecular Genetics, University of California, Davis, Davis, United States.
Roger SciammasCenter for Immunology and Infectious Diseases, University of California, Davis, Davis, United States.
Lionel SanzDepartment of Molecular and Cellular Biology, University of California, Davis, Davis, United States.
Frédéric ChédinDepartment of Molecular and Cellular Biology, University of California, Davis, Davis, United States.
Jacqueline BarlowDepartment of Microbiology and Molecular Genetics, University of California, Davis, Davis, United States.ORCID 0000-0002-9042-6245
University of California, Davis · US

Funding

Staff InvestigatorsP30CA093373 · NCI · UNIVERSITY OF CALIFORNIA DAVIS · PI Laura Marcu · 2002 to 2026
$84.9M
Understanding the mechanisms underlying R-loop biogenesis and resolution in mammals.R35GM139549 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Frederic Louis Chedin · 2021 to 2026
$4.4M
R-loop-induced DNA damage during immunoglobulin class switch recombinationR01GM134537 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BARLOW, JACQUELINE · 2019 to 2023
$1.8M
UC Davis Shared Astrios Cell SorterS10OD018223 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SHACKLETT, BARBARA L. · 2015 to 2015
$555k
Characterization of replication-mediated DNA damage in B lymphocytesK22CA188106 · NCI · UNIVERSITY OF CALIFORNIA AT DAVIS · PI BARLOW, JACQUELINE · 2015 to 2017
$486k
Heterogeneity of plasma cell states is regulated by the dynamics of IRF4 expressionR21AI151610 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI SCIAMMAS, ROGER · 2020 to 2021
$432k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NCI NIH HHS K22 CA188106NCI NIH HHS P30 CA093373NIAID NIH HHS R21 AI151610NIGMS NIH HHS R01 GM134537NIGMS NIH HHS R35 GM139549NIH HHS S10 OD010786NIH HHS S10 OD018223
6 · The paper itself

Abstract

Class switch recombination generates distinct antibody isotypes critical to a robust adaptive immune system, and defects are associated with autoimmune disorders and lymphomagenesis. Transcription is required during class switch recombination to recruit the cytidine deaminase AID-an essential step for the formation of DNA double-strand breaks-and strongly induces the formation of R loops within the immunoglobulin heavy-chain locus. However, the impact of R loops on double-strand break formation and repair during class switch recombination remains unclear. Here, we report that cells lacking two enzymes involved in R loop removal-senataxin and RNase H2-exhibit increased R loop formation and genome instability at the immunoglobulin heavy-chain locus without impacting its transcriptional activity, AID recruitment, or class switch recombination efficiency. Senataxin and RNase H2-deficient cells also exhibit increased insertion mutations at switch junctions, a hallmark of alternative end joining. Importantly, these phenotypes were not observed in cells lacking senataxin or RNase H2B alone. We propose that senataxin acts redundantly with RNase H2 to mediate timely R loop removal, promoting efficient repair while suppressing AID-dependent genome instability and insertional mutagenesis.

Indexed as

Recombination, GeneticRibonucleasesCytidine DeaminaseEndoribonucleasesGenomic InstabilityHumansImmunoglobulin Class SwitchingImmunoglobulin IsotypesCytidine DeaminaseEndoribonucleasesImmunoglobulin IsotypesRibonucleaseschromosomesclass switch recombinationDNA repairgene expressionimmunologyinflammationmouseR loops

Identifiers

PMID36542058
PMCPMC9771370
OpenAlexW4312018170

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.