Evidence map›Paper›PMID 36539515›Full record

ArticleThe AAPS journal2022

Development and Validation of a Western Blot Method to Quantify Mini-Dystrophin in Human Skeletal Muscle Biopsies.

Catherine I Soderstrom, Jennifer Larsen, Carolina Owen, David Gifondorwa, David Beidler, Florence H Yong, Patricia Conrad, Hendrik Neubert, Steven A Moore, Mohamed Hassanein

Open access · hybridFull text read
In one paragraph

Article in The AAPS journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Catherine I SoderstromEarly Clinical Development, Precision Medicine, Cambridge, MA, USA.
Jennifer LarsenEarly Clinical Development, Precision Medicine, Cambridge, MA, USA.
Carolina OwenEarly Clinical Development, Precision Medicine, Cambridge, MA, USA.
David GifondorwaClinical Assay Group, Global Product Development (GPD), Pfizer Inc, Groton, Connecticut, USA.
David BeidlerEarly Clinical Development, Precision Medicine, Pfizer Inc., 1 Portland, Cambridge, Massachusetts, 02139, USA.
Florence H YongBiostatistics, Early Clinical Development, Worldwide Research & Development, Pfizer Inc., Cambridge, MA, USA.
Patricia ConradEarly Clinical Development, Precision Medicine, Cambridge, MA, USA.
Hendrik NeubertBiomedicine Design, Worldwide Research & Development, Pfizer Inc., Andover, Massachusetts, USA.
Steven A MooreSenator Paul D. Wellstone Muscular Dystrophy Specialized Research Center, Department of Pathology, Roy J. and Lucille A. Carver College of Medicine, The University of Iowa, Iowa City, Iowa, 52242, USA.
Mohamed HassaneinEarly Clinical Development, Precision Medicine, Pfizer Inc., 1 Portland, Cambridge, Massachusetts, 02139, USA. mohamed.hassanein@pfizer.com.
Pfizer (United States) · USPrecision for Medicine (United States) · USUniversity of Iowa · US

Funding

Muscular Dystrophy Specialized Research Center: Project 2P50NS053672 · NINDS · UNIVERSITY OF IOWA · PI KEVIN P. CAMPBELL · 2020 to 2026
$11.9M
NINDS NIH HHS P50 NS053672
6 · The paper itself

Abstract

Duchenne muscular dystrophy (DMD) is a degenerative muscular disease affecting roughly one in 5000 males at birth. The disease is often caused by inherited X-linked recessive pathogenic variants in the dystrophin gene, but may also arise from de novo mutations. Disease-causing variants include nonsense, out of frame deletions or duplications that result in loss of dystrophin protein expression. There is currently no cure for DMD and the few treatment options available aim at slowing muscle degradation. New advances in gene therapy and understanding of dystrophin (DYS) expression in other muscular dystrophies have opened new opportunities for treatment. Therefore, reliable methods are needed to monitor dystrophin expression and assess the efficacy of new therapies for muscular dystrophies such as DMD and Becker muscular dystrophy (BMD). Here, we describe the validation of a novel Western blot (WB) method for the quantitation of mini-dystrophin protein in human skeletal muscle tissues that is easy to adopt in most laboratory settings. This WB method was assessed through precision, accuracy, selectivity, dilution linearity, stability, and repeatability. Based on mini-DYS standard performance, the assay has a dynamic range of 0.5-15 ng protein (per 5 µg total protein per lane), precision of 3.3 to 25.5%, and accuracy of - 7.5 to 3.3%. Our stability assessment showed that the protein is stable after 4 F/T cycles, up to 2 h at RT and after 7 months at - 70°C. Furthermore, our WB method was compared to the results from our recently published LC-MS method. Workflow for our quantitative WB method to determine mini-dystrophin levels in muscle tissues (created in Biorender.com). Step 1 involves protein extraction from skeletal muscle tissue lysates from control, DMD, or BMD biospecimen. Step 2 measures total protein concentrations. Step 3 involves running gel electrophoresis with wild-type dystrophin (wt-DYS) from muscle tissue extracts alongside mini-dystrophin STD curve and mini-DYS and protein normalization with housekeeping GAPDH.

Indexed as

DystrophinMuscular Dystrophy, DuchenneBiopsyBlotting, WesternHumansInfant, NewbornMaleMuscle, SkeletalDystrophinAAV9Duchenne muscular dystrophyGene therapyQuantitativeWestern blot

Identifiers

PMID36539515
PMCPMC10034579
OpenAlexW4312094426

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read40
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.