Evidence map›Paper›PMID 36537573›Full record

ArticleDevelopment (Cambridge, England)2023

Neurog2 regulates Isl1 to modulate horizontal cell number.

Patrick W Keeley, Pooja S Patel, Matthew S Ryu, Benjamin E Reese

Open access · hybridAbstract read
In one paragraph

Article in Development (Cambridge, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Patrick W KeeleyNeuroscience Research Institute, University of California at Santa Barbara, Santa Barbara, CA 93106-5060, USA.ORCID 0000-0003-1260-498X
Pooja S PatelNeuroscience Research Institute, University of California at Santa Barbara, Santa Barbara, CA 93106-5060, USA.
Matthew S RyuNeuroscience Research Institute, University of California at Santa Barbara, Santa Barbara, CA 93106-5060, USA.ORCID 0000-0001-7553-091X
Benjamin E ReeseNeuroscience Research Institute, University of California at Santa Barbara, Santa Barbara, CA 93106-5060, USA.
University of California, Santa Barbara · US

Funding

Development of Retinal Bipolar CellsR01EY019968 · NEI · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI REESE, BENJAMIN E · 2010 to 2023
$4.9M
Spectral Laser Scanning Biological MicroscopeS10OD010610 · OD · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI RAVEN, MARY A · 2012 to 2012
$429k
NEI NIH HHS R01 EY019968NIH HHS EY-019968NIH HHS S10 OD010610
6 · The paper itself

Abstract

The population sizes of different retinal cell types vary between different strains of mice, and that variation can be mapped to genomic loci in order to identify its polygenic origin. In some cases, controlling genes act independently, whereas in other instances, they exhibit epistasis. Here, we identify an epistatic interaction revealed through the mapping of quantitative trait loci from a panel of recombinant inbred strains of mice. The population of retinal horizontal cells exhibits a twofold variation in number, mapping to quantitative trait loci on chromosomes 3 and 13, where these loci are shown to interact epistatically. We identify a prospective genetic interaction underlying this, mediated by the bHLH transcription factor Neurog2, at the chromosome 3 locus, functioning to repress the LIM homeodomain transcription factor Isl1, at the chromosome 13 locus. Using single and double conditional knockout mice, we confirm the countervailing actions of each gene, and validate in vitro a crucial role for two single nucleotide polymorphisms in the 5'UTR of Isl1, one of which yields a novel E-box, mediating the repressive action of Neurog2.

Indexed as

Quantitative Trait LociRetinaAnimalsBasic Helix-Loop-Helix ProteinsCell CountChromosome MappingEpistasis, GeneticLIM-Homeodomain ProteinsMiceMice, KnockoutNerve Tissue ProteinsProspective StudiesTranscription FactorsBasic Helix-Loop-Helix Proteinsinsulin gene enhancer binding protein Isl-1LIM-Homeodomain ProteinsNerve Tissue ProteinsNeurog2 protein, mouseTranscription FactorsConditional knockoutE-boxEpistasisQTLRecombinant inbred strainSNPVariant

Identifiers

PMID36537573
PMCPMC10108602
OpenAlexW4312018324

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.