Evidence map›Paper›PMID 36537119›Full record

ArticlePlant physiology2023

The Mediator complex subunit MED25 interacts with HDA9 and PIF4 to regulate thermomorphogenesis.

Umidjon Shapulatov, Martijn van Zanten, Mark van Hoogdalem, Mara Meisenburg, Alexander van Hall, Iris Kappers, Carlo Fasano, Paolo Facella, Chi Cheng Loh, Giorgio Perrella and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
8.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. PIF transcription factors-versatile plant epigenome landscapers.Frontiers in epigenetics and epigenomics · 2024
    Review
  11. Light signaling as cellular integrator of multiple environmental cues in plants.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Umidjon ShapulatovLaboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.ORCID 0000-0002-9368-8638
Martijn van ZantenPlant Stress Resilience, Institute of Environmental Biology, Utrecht University, Padualaan 8, 3584 CH Utrecht, the Netherlands.ORCID 0000-0002-2810-7374
Mark van HoogdalemLaboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.ORCID 0000-0002-3179-075X
Mara MeisenburgLaboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.ORCID 0000-0002-3071-2872
Alexander van HallLaboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.ORCID 0000-0002-5362-4007
Iris KappersLaboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.ORCID 0000-0003-3349-3473
Carlo FasanoItalian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Trisaia Research Centre, S.S. Ionica, km 419.5, 75026 Rotondella (Matera), Italy.ORCID 0000-0002-6368-1398
Paolo FacellaItalian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Trisaia Research Centre, S.S. Ionica, km 419.5, 75026 Rotondella (Matera), Italy.ORCID 0000-0001-9076-3754
Chi Cheng LohTemasek Life Science Laboratory, 1 Research Link, National University of Singapore, Singapore 117604, Singapore.ORCID 0000-0002-4278-8903
Giorgio PerrellaItalian National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Trisaia Research Centre, S.S. Ionica, km 419.5, 75026 Rotondella (Matera), Italy.ORCID 0000-0001-8972-1733
Alexander van der KrolLaboratory of Plant Physiology, Wageningen University & Research, Droevendaalsesteeg 1, 6708 PB Wageningen, The Netherlands.ORCID 0000-0001-6585-7572
Wageningen University & Research · NLNational Agency for New Technologies, Energy and Sustainable Economic Development · ITTemasek Life Sciences Laboratory · SGUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Thermomorphogenesis is, among other traits, characterized by enhanced hypocotyl elongation due to the induction of auxin biosynthesis genes like YUCCA8 by transcription factors, most notably PHYTOCHROME INTERACTING FACTOR 4 (PIF4). Efficient binding of PIF4 to the YUCCA8 locus under warmth depends on HISTONE DEACETYLASE 9 (HDA9) activity, which mediates histone H2A.Z depletion at the YUCCA8 locus. However, HDA9 lacks intrinsic DNA-binding capacity, and how HDA9 is recruited to YUCCA8, and possibly other PIF4-target sites, is currently not well understood. The Mediator complex functions as a bridge between transcription factors bound to specific promoter sequences and the basal transcription machinery containing RNA polymerase II. Mutants of Mediator component Mediator25 (MED25) exhibit reduced hypocotyl elongation and reduced expression of YUCCA8 at 27°C. In line with a proposed role for MED25 in thermomorphogenesis in Arabidopsis (Arabidopsis thaliana), we demonstrated an enhanced association of MED25 to the YUCCA8 locus under warmth and interaction of MED25 with both PIF4 and HDA9. Genetic analysis confirmed that MED25 and HDA9 operate in the same pathway. Intriguingly, we also showed that MED25 destabilizes HDA9 protein. Based on our findings, we propose that MED25 recruits HDA9 to the YUCCA8 locus by binding to both PIF4 and HDA9.

Indexed as

ArabidopsisArabidopsis ProteinsPhytochromeBasic Helix-Loop-Helix ProteinsGene Expression Regulation, PlantHistone DeacetylasesMediator ComplexTranscription FactorsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsHDA9 protein, ArabidopsisHistone DeacetylasesMediator ComplexPhytochromePIF4 protein, ArabidopsisTranscription Factors

Identifiers

PMID36537119
PMCPMC10152658
OpenAlexW4312018496

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.