Evidence map›Paper›PMID 36536293›Full record

ArticleBMC genomics2022

Comparative genomic analysis of Citrobacter sp. XT1-2-2 reveals insights into the molecular mechanism of microbial immobilization of heavy metals.

Shiping Shan, Wei Cheng, Yilu Li, Min Zhang, Zhudong Liu, Yushuang Wang, Xiaowu Wei, Zujiao Fu, Shandong Wu, Dongxia Du and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Genetic manipulation ofApplied and environmental microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Shiping Shan *Hunan Institute of Microbiology, 410009, Changsha, Hunan, China.
Wei Cheng *Hunan Institute of Microbiology, 410009, Changsha, Hunan, China.
Yilu Li *Hunan Institute of Microbiology, 410009, Changsha, Hunan, China.
Min ZhangHunan Institute of Microbiology, 410009, Changsha, Hunan, China. 178488510@qq.com.
Zhudong LiuHunan Institute of Microbiology, 410009, Changsha, Hunan, China.
Yushuang WangHunan Institute of Microbiology, 410009, Changsha, Hunan, China.
Xiaowu WeiHunan Institute of Microbiology, 410009, Changsha, Hunan, China.
Zujiao FuHunan Institute of Microbiology, 410009, Changsha, Hunan, China.
Shandong WuHunan Institute of Microbiology, 410009, Changsha, Hunan, China.
Dongxia DuHunan Institute of Microbiology, 410009, Changsha, Hunan, China. xiaxia414@126.com.
Zhaohui GuoHunan Institute of Microbiology, 410009, Changsha, Hunan, China. 157263033@qq.com.
Hunan Institute of Microbiology · CN

Funding

Key Technology Research Project of Hunan Province of China 2021NK1040National Natural Science Foundation of China 32171633Natural Science Foundation of Hunan Province of China 2021JJ40307
6 · The paper itself

Abstract

backgroundIn our previous study, Citrobacter sp. XT1-2-2 was isolated from high cadmium-contaminated soils, and demonstrated an excellent ability to decrease the bioavailability of cadmium in the soil and inhibit cadmium uptake in rice. In addition, the strain XT1-2-2 could significantly promote rice growth and increase rice biomass. Therefore, the strain XT1-2-2 shows great potential for remediation of cadmium -contaminated soils. However, the genome sequence of this organism has not been reported so far. 

resultsHere the basic characteristics and genetic diversity of the strain XT1-2-2 were described, together with the draft genome and comparative genomic results. The strain XT1-2-2 is 5040459 bp long with an average G + C content of 52.09%, and contains a total of 4801 genes. Putative genomic islands were predicted in the genome of Citrobacter sp. XT1-2-2. All genes of a complete set of sulfate reduction pathway and various putative heavy metal resistance genes in the genome were identified and analyzed.

conclusionsThese analytical results provide insights into the genomic basis of microbial immobilization of heavy metals.

Indexed as

Metals, HeavyOryzaSoil PollutantsCadmiumCitrobacterGenomicsSoilCadmiumMetals, HeavySoilSoil PollutantsCadmiumCitrobacterMicrobial immobilizationRiceSulfate reduction pathway

Identifiers

PMID36536293
PMCPMC9764585
OpenAlexW4312093618

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.