Evidence map›Paper›PMID 36536032›Full record

ArticleCommunications biology2022

Alternative splicing and genetic variation of mhc-e: implications for rhesus cytomegalovirus-based vaccines.

Hayden Brochu, Ruihan Wang, Tammy Tollison, Chul-Woo Pyo, Alexander Thomas, Elizabeth Tseng, Lynn Law, Louis J Picker, Michael Gale, Daniel E Geraghty and 1 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. The murine MHC-E molecule Qa-1Frontiers in immunology · 2026
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Hayden BrochuDepartment of Molecular Biomedical Sciences, North Carolina State University College of Veterinary Medicine, Raleigh, NC, 27607, USA.ORCID 0000-0002-7234-3235
Ruihan WangClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA.
Tammy TollisonDepartment of Molecular Biomedical Sciences, North Carolina State University College of Veterinary Medicine, Raleigh, NC, 27607, USA.ORCID 0000-0002-7193-8456
Chul-Woo PyoClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA.
Alexander ThomasClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA.
Elizabeth TsengPacific Biosciences, Menlo Park, CA, 94025, USA.
Lynn LawDepartment of Immunology, University of Washington, Seattle, WA, USA.
Louis J PickerVaccine and Gene Therapy Institute, Oregon Health & Science University, Beaverton, OR, 97006, USA.
Michael GaleDepartment of Immunology, University of Washington, Seattle, WA, USA.ORCID 0000-0002-6332-7436
Daniel E GeraghtyClinical Research Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA. geraghty@fredhutch.org.
Xinxia PengDepartment of Molecular Biomedical Sciences, North Carolina State University College of Veterinary Medicine, Raleigh, NC, 27607, USA. xpeng5@ncsu.edu.ORCID 0000-0002-0117-3582
Fred Hutch Cancer Center · USNorth Carolina State University · USUniversity of Washington · USCape Town HVTN Immunology Laboratory / Hutchinson Centre Research Institute of South Africa · ZAOregon Health & Science University · USPacific Biosciences (United States) · US

Funding

Upgrade of confocal microscopy at the Oregon National Primate Research CenterP51OD011092 · OD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Bonnie J. Nagel · 2012 to 2026
$203.9M
Washington National Primate Research CenterP51OD010425 · OD · UNIVERSITY OF WASHINGTON · PI Mari Ostendorf · 2012 to 2026
$201.8M
University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI EDWIN ROBERTO ORELLANA · 1988 to 2026
$104.9M
Consortia for Innovative AIDS Research in Nonhuman PrimatesUM1AI124377 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI BAROUCH, DAN H., PICKER, LOUIS J. · 2016 to 2021
$53.0M
Virology and Immunology MonitoringP01AI094417 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI PICKER, LOUIS J. · 2011 to 2016
$20.5M
Virology and Vector Production Core CU19AI128741 · NIAID · OREGON HEALTH & SCIENCE UNIVERSITY · PI PICKER, LOUIS J. · 2017 to 2021
$11.8M
NIAID NIH HHS HHSN272201600027CNIAID NIH HHS HHSN272201800008CNIAID NIH HHS HHSN272201800008INIAID NIH HHS P01 AI094417NIAID NIH HHS P30 AI027757NIAID NIH HHS U19 AI128741NIAID NIH HHS UM1 AI124377NIH HHS AI027757NIH HHS P51 OD010425NIH HHS P51OD010425NIH HHS P51 OD011092
6 · The paper itself

Abstract

Rhesus cytomegalovirus (RhCMV)-based vaccination against Simian Immunodeficiency virus (SIV) elicits MHC-E-restricted CD8+ T cells that stringently control SIV infection in ~55% of vaccinated rhesus macaques (RM). However, it is unclear how accurately the RM model reflects HLA-E immunobiology in humans. Using long-read sequencing, we identified 16 Mamu-E isoforms and all Mamu-E splicing junctions were detected among HLA-E isoforms in humans. We also obtained the complete Mamu-E genomic sequences covering the full coding regions of 59 RM from a RhCMV/SIV vaccine study. The Mamu-E gene was duplicated in 32 (54%) of 59 RM. Among four groups of Mamu-E alleles: three ~5% divergent full-length allele groups (G1, G2, G2_LTR) and a fourth monomorphic group (G3) with a deletion encompassing the canonical Mamu-E exon 6, the presence of G2_LTR alleles was significantly (p = 0.02) associated with the lack of RhCMV/SIV vaccine protection. These genomic resources will facilitate additional MHC-E targeted translational research.

Indexed as

Alternative SplicingCytomegalovirus VaccinesHistocompatibility Antigens Class IAnimalsCytomegalovirusGenetic VariationHLA-E AntigensHumansMacaca mulattaSimian Immunodeficiency VirusCytomegalovirus VaccinesHistocompatibility Antigens Class IHLA-E Antigens

Identifiers

PMID36536032
PMCPMC9762870
OpenAlexW4313311767

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.