Evidence map›Paper›PMID 36535247›Full record

ArticleThe American journal of tropical medicine and hygiene2023

Prevalence and Phenotypic and Molecular Characterization of Carbapenemase-Producing Gram-Negative Bacteria in Gabon.

Annicet-Clotaire Dikoumba, Richard Onanga, Hélène Jean-Pierre, Marie-Noelle Didelot, Yann Dumont, Abdoul-Salam Ouedraogo, Edgard-Brice Ngoungou, Sylvain Godreuil

Open access · hybridAbstract read
In one paragraph

Article in The American journal of tropical medicine and hygiene, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 7 institutions in 3 countries.

Annicet-Clotaire DikoumbaHôpital d'Instruction des Armées Omar Bongo Ondimba, Libreville, Gabon.
Richard OnangaCentre Interdisciplinaire de Recherches Médicales de Franceville, Franceville, Gabon.
Hélène Jean-PierreLaboratoire de Bactériologie, Centre Hospitalier Universitaire de Montpellier, Montpellier, France.
Marie-Noelle DidelotLaboratoire de Bactériologie, Centre Hospitalier Universitaire de Montpellier, Montpellier, France.
Yann DumontLaboratoire de Bactériologie, Centre Hospitalier Universitaire de Montpellier, Montpellier, France.
Abdoul-Salam OuedraogoDepartment of Medical Bacteriology and Virology, National Reference Laboratory for Antimicrobial Resistance, University Hospital Centre Sanou Sourou, Bobo Dioulasso, Burkina.
Edgard-Brice NgoungouDépartement d'Epidémiologie, Biostatistiques et Informatique Médicale/Unité de Recherche en Epidémiologie des Maladies Chroniques et Santé Environnement, Faculté de Médecine, Université des Sciences de la Santé, Libreville, Gabon.
Sylvain GodreuilLaboratoire de Bactériologie, Centre Hospitalier Universitaire de Montpellier, Montpellier, France.
Maladies Infectieuses et Vecteurs: Écologie, Génétique, Évolution et Contrôle · FRCentre Hospitalier Universitaire de Montpellier · FRCentre International de Recherches Médicales de Franceville · GAInstitut de Recherche pour le Développement · FRNazi Boni University · BFUniversité de Montpellier · FRUniversité des Sciences de la Santé · GA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Data collection and monitoring of carbapenemase-producing (CP) Gram-negative bacteria (GNB) are often limited. This study determined CP-GNB prevalence in Gabon and the genetic origins of the resistance genes. From January 2016 to March 2018, 869 clinically significant GNB isolates from inpatients and outpatients, and 19 fecal samples (inpatients) were analyzed in the main hospitals of Gabon. Fecal samples were screened using ChromID® CARBA SMART selective chromogenic medium biplates. Species were identified by matrix-assisted laser desorption ionization-time of flight mass spectrometry. Antibiotic susceptibility was tested using the disk diffusion method on Müller-Hinton agar, and resistance genes were assessed by multiplex polymerase chain reaction and sequencing. Overall, 1.61% of clinical isolates (14 of 869) and 5.26% of fecal samples (1 of 19) were CP-GNB. The CP-GNB rate was higher among inpatients (2.98%) than outpatients (0.33%), in intensive care units (28.57%, 4 of 14), and in urine samples (35.71%, 5 of 14). The most common CP-GNB were Klebsiella pneumoniae (53.33%) and Acinetobacter baumannii (26.67%). blaOXA-48 was the predominant carbapenemase-encoding gene (40%), followed by blaNDM-5 (33.33%). The A. baumannii multilocus sequence types ST2 and ST78, Enterobacter cloacae ST78, Escherichia coli ST2, and K. pneumonia ST48 and ST147 were found. These data indicate that CP bacteria are present in clinical and carriage samples. Preventive measures are needed to avoid the spread of resistance genes.

Indexed as

beta-LactamasesInterleukin-1 Receptor-Like 1 ProteinAnti-Bacterial AgentsBacterial ProteinsEnterobacter cloacaeGabonGram-Negative BacteriaHumansMicrobial Sensitivity TestsPrevalenceAnti-Bacterial AgentsBacterial Proteinsbeta-LactamasescarbapenemaseInterleukin-1 Receptor-Like 1 Protein

Identifiers

PMID36535247
PMCPMC9896342
OpenAlexW4311885705

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.