Evidence map›Paper›PMID 36533926›Full record

ArticlemBio2023

Population Genomics Provide Insights into the Global Genetic Structure of

Flávia Rogério, Riccardo Baroncelli, Francisco Borja Cuevas-Fernández, Sioly Becerra, JoAnne Crouch, Wagner Bettiol, M Andrea Azcárate-Peril, Martha Malapi-Wight, Veronique Ortega, Javier Betran and 11 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
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  4. The CJournal of fungi (Basel, Switzerland) · 2024
    Article
  5. Article
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  7. Chromosome-level analysis of theFrontiers in microbiology · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 13 institutions in 8 countries.

Flávia RogérioInstituto de Investigación en Agrobiotecnología (CIALE), Departamento de Microbiología y Genética, Universidad de Salamanca, Salamanca, Spain.ORCID 0000-0001-7801-5112
Riccardo BaroncelliInstituto de Investigación en Agrobiotecnología (CIALE), Departamento de Microbiología y Genética, Universidad de Salamanca, Salamanca, Spain.ORCID 0000-0002-5878-1159
Francisco Borja Cuevas-FernándezInstituto de Investigación en Agrobiotecnología (CIALE), Departamento de Microbiología y Genética, Universidad de Salamanca, Salamanca, Spain.
Sioly BecerraInstituto de Investigación en Agrobiotecnología (CIALE), Departamento de Microbiología y Genética, Universidad de Salamanca, Salamanca, Spain.ORCID 0000-0003-2564-1982
JoAnne CrouchForeign Disease and Weed Science Unit, United States Department of Agriculture, Fort Detrick, Maryland, USA.
Wagner BettiolEmbrapa Environment, Jaguariúna, São Paulo, Brazil.
M Andrea Azcárate-PerilCenter for Gastrointestinal Biology and Disease, Department of Medicine, School of Medicine, University of North Carolina, Chapel Hill, North Carolina, USA.
Martha Malapi-WightUSDA Animal and Plant Health Inspection Services, Biotechnology Regulatory Services, Riverdale, Maryland, USA.
Veronique OrtegaSyngenta Seeds La Grangette, Lombez, France.
Javier BetranBayer Crop Science/Monsanto SAS, Monbequi, France.
Albert TenutaOntario Ministry of Agriculture, Food, and Rural Affairs, University of Guelph-Ridgetown, Ridgetown, Ontario, Canada.
José S DambolenaFacultad de Ciencias Exactas Físicas y Naturales, Universidad Nacional de Córdoba, IMBIV-CONICET-ICTA, Córdoba, Argentina.
Paul D EskerDepartment of Plant Pathology and Environmental Microbiology, The Pennsylvania State University, State College, Pennsylvania, USA.
Pedro RevillaMisión Biológica de Galicia, Spanish National Research Council (CSIC), Pontevedra, Spain.
Tamra A Jackson-ZiemsDepartment of Plant Pathology, University of Nebraska-Lincoln, Nebraska, USA.
Jürg HiltbrunnerFederal Department of Economic Affairs, Zurich, Switzerland.
Gary MunkvoldDepartment of Plant Pathology and Microbiology, Iowa State University, Ames, Iowa, USA.
Ivica BuhiničekBC Institute for Breeding and Production of Field Crops, Dugo Selo, Croatia.
José L Vicente-VillardónStatistics Department, University of Salamanca, Salamanca, Spain.
Serenella A Sukno *Instituto de Investigación en Agrobiotecnología (CIALE), Departamento de Microbiología y Genética, Universidad de Salamanca, Salamanca, Spain.ORCID 0000-0003-3248-6490
Michael R Thon *Instituto de Investigación en Agrobiotecnología (CIALE), Departamento de Microbiología y Genética, Universidad de Salamanca, Salamanca, Spain.ORCID 0000-0002-7225-7003
Universidad de Salamanca · ESAnimal and Plant Health Inspection Service · USBayer (France) · FRBrazilian Agricultural Research Corporation · BRConsejo Nacional de Investigaciones Científicas y Técnicas · ARConsejo Superior de Investigaciones Científicas · ESFederal Department of Economic Affairs, Education and Research · CHIowa State University · USMinistry of Agriculture, Food and Rural Affairs · CAPennsylvania State University · USUnited States Department of Agriculture · USUniversity of Nebraska–Lincoln · USUniversity of North Carolina at Chapel Hill · US

Funding

UNIV OF NORTH CAROLINA CLINICAL NUTRITION RESEARCH UNITP30DK056350 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Ian Michael Carroll · 1999 to 2026
$31.6M
PILOT AND FEASIBILITY STUDIESP30DK034987 · NIDDK · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Temitope O. Keku · 1985 to 2026
$30.5M
NIDDK NIH HHS P30 DK034987NIDDK NIH HHS P30 DK056350
6 · The paper itself

Abstract

Understanding the genetic diversity and mechanisms underlying genetic variation in pathogen populations is crucial to the development of effective control strategies. We investigated the genetic diversity and reproductive biology of Colletotrichum graminicola isolates which infect maize by sequencing the genomes of 108 isolates collected from 14 countries using restriction site-associated DNA sequencing (RAD-seq) and whole-genome sequencing (WGS). Clustering analyses based on single-nucleotide polymorphisms revealed three genetic groups delimited by continental origin, compatible with short-dispersal of the pathogen and geographic subdivision. Intra- and intercontinental migration was observed between Europe and South America, likely associated with the movement of contaminated germplasm. Low clonality, evidence of genetic recombination, and high phenotypic diversity were detected. We show evidence that, although it is rare (possibly due to losses of sexual reproduction- and meiosis-associated genes)

Indexed as

ColletotrichumZea maysBase SequenceEcosystemGenetic VariationMetagenomicsPlant Diseasesfungal plant pathogenmigrationphylogeographyphytopathologypopulation geneticspopulation genomicsrecombination

Identifiers

PMID36533926
PMCPMC9973043
OpenAlexW4311927976

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.