Evidence map›Paper›PMID 36533556›Full record

ArticleDisease models & mechanisms2022

Variable phenotypes and penetrance between and within different zebrafish ciliary transition zone mutants.

Jun Wang, Holly R Thomas, Robert G Thompson, Stephanie C Waldrep, Joseph Fogerty, Ping Song, Zhang Li, Yongjie Ma, Peu Santra, Jonathan D Hoover and 6 more

Open access · goldAbstract read
In one paragraph

Article in Disease models & mechanisms, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
5.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 30 citations in OpenAlex.

  1. Review
  2. Loss of U11/U12 spliceosome geneLife science alliance · 2026
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  5. iScience · 2025
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  6. Review
  7. Engineering precision zebrafish alleles of human disease.bioRxiv : the preprint server for biology · 2025
    Article
  8. Article
  9. Article
  10. Ciliary and Non-Ciliary Roles of IFT88 in Development and Diseases.International journal of molecular sciences · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Jun WangDepartment of Pharmacology and Toxicology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.ORCID 0000-0002-3413-5208
Holly R ThomasDepartment of Pharmacology and Toxicology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.
Robert G ThompsonDepartment of Pharmacology and Toxicology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.
Stephanie C WaldrepDepartment of Pharmacology and Toxicology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.
Joseph FogertyDepartment of Ophthalmic Research, Cole Eye Institute, Cleveland Clinic, Cleveland, OH 44106, USA.
Ping SongDepartment of Ophthalmic Research, Cole Eye Institute, Cleveland Clinic, Cleveland, OH 44106, USA.
Zhang LiDepartment of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, AL 35294, USA.
Yongjie MaDepartment of Pharmacology and Toxicology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.
Peu SantraDepartment of Cell and Developmental Biology, SUNY Upstate Medical University, Syracuse, NY 13210, USA.
Jonathan D HooverDepartment of Pharmacology and Toxicology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.
Nan Cher YeoDepartment of Pharmacology and Toxicology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.
Iain A DrummondDavis Center for Aging and Regeneration, Mount Desert Island Biological Laboratory, 159 Old Bar Harbor Road, Bar Harbor, ME 04609, USA.
Bradley K YoderDepartment of Cell, Developmental and Integrative Biology, University of Alabama at Birmingham, AL 35294, USA.
Jeffrey D AmackDepartment of Cell and Developmental Biology, SUNY Upstate Medical University, Syracuse, NY 13210, USA.
Brian PerkinsDepartment of Ophthalmic Research, Cole Eye Institute, Cleveland Clinic, Cleveland, OH 44106, USA.
John M ParantDepartment of Pharmacology and Toxicology, University of Alabama at Birmingham School of Medicine, Birmingham, AL 35294, USA.ORCID 0000-0001-9084-5098
University of Alabama at Birmingham · USCleveland Clinic · USSUNY Upstate Medical University · USMount Desert Island Biological Laboratory · US

Funding

UAB Pilot Center for Precision Animal Modeling (C-PAM) - Resource and Service SectionU54OD030167 · OD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Bradley K. Yoder · 2020 to 2026
$15.3M
RESOURCE/SERVICE CORE C - MOLECULAR INFORMATICS MODULEP30EY025585 · NEI · CLEVELAND CLINIC LERNER COM-CWRU · PI BELA ANAND-APTE · 2016 to 2026
$7.7M
UAB Childhood Cystic Kidney Disease Core Center (UAB-CCKDCC) - Therapeutic Development and Screening ResourceU54DK126087 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Bradley K. Yoder · 2020 to 2026
$6.7M
Cilia Assembly and Transport in the Vertebrate RetinaR01EY017037 · NEI · TEXAS A&M UNIVERSITY · PI PERKINS, BRIAN D · 2006 to 2021
$5.5M
GENETIC ANALYSIS OF ZEBRAFISH KIDNEY DEVELOPMENTR01DK053093 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI DRUMMOND, IAIN A. · 1997 to 2018
$5.2M
Cilia and Cystic Kidney DiseaseR01DK065655 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI YODER, BRADLEY K. · 2004 to 2017
$4.4M
Injury Response Mediated Pathogenesis in Renal CiliopathiesR01DK115752 · NIDDK · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Bradley K. Yoder · 2018 to 2026
$4.0M
Stimulating Retina Regeneration from Muller Cells in Progressive Retinal DegenerationsR01EY030574 · NEI · CLEVELAND CLINIC LERNER COM-CWRU · PI PERKINS, BRIAN D · 2020 to 2022
$1.6M
Generate Zebrafish Conditional Knockout Model for Ciliopathy ResearchR21OD030065 · OD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI PARANT, JOHN M · 2021 to 2022
$408k
Identification of mechanisms that regulate pH in embryonic ciliaR03HD097543 · NICHD · UPSTATE MEDICAL UNIVERSITY · PI AMACK, JEFFREY D · 2019 to 2020
$162k
NEI NIH HHS P30 EY025585NEI NIH HHS R01 EY017037NEI NIH HHS R01 EY030574NICHD NIH HHS R03 HD097543NIDDK NIH HHS R01 DK053093NIDDK NIH HHS R01 DK065655NIDDK NIH HHS R01 DK115752NIDDK NIH HHS U54 DK126087NIH HHS R21 OD030065NIH HHS U54 OD030167
6 · The paper itself

Abstract

Meckel syndrome, nephronophthisis, Joubert syndrome and Bardet-Biedl syndrome are caused by mutations in proteins that localize to the ciliary transition zone (TZ). The phenotypically distinct syndromes suggest that these TZ proteins have differing functions. However, mutations in a single TZ gene can result in multiple syndromes, suggesting that the phenotype is influenced by modifier genes. We performed a comprehensive analysis of ten zebrafish TZ mutants, including mks1, tmem216, tmem67, rpgrip1l, cc2d2a, b9d2, cep290, tctn1, nphp1 and nphp4, as well as mutants in ift88 and ift172. Our data indicate that variations in phenotypes exist between different TZ mutants, supporting different tissue-specific functions of these TZ genes. Further, we observed phenotypic variations within progeny of a single TZ mutant, reminiscent of multiple disease syndromes being associated with mutations in one gene. In some mutants, the dynamics of the phenotype became complex with transitory phenotypes that are corrected over time. We also demonstrated that multiple-guide-derived CRISPR/Cas9 F0 'crispant' embryos recapitulate zygotic null phenotypes, and rapidly identified ciliary phenotypes in 11 cilia-associated gene candidates (ankfn1, ccdc65, cfap57, fhad1, nme7, pacrg, saxo2, c1orf194, ttc26, zmynd12 and cfap52).

Indexed as

CiliaPolycystic Kidney DiseasesAnimalsBiological Variation, PopulationCiliary Motility DisordersEncephalocelePenetranceRetinitis PigmentosaSyndromeVesicular Transport ProteinsZebrafishZebrafish ProteinsCC2D2A protein, zebrafishVesicular Transport ProteinsZebrafish ProteinsCiliaCrispantCRISPRJoubert syndromeMeckel syndromeNephronophthisisPenetrancePronephric cystsRetinal degenerationScoliosisTransition zoneZebrafish

Identifiers

PMID36533556
PMCPMC9844136
OpenAlexW4312018278

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.