Evidence map›Paper›PMID 36533440›Full record

ArticleNucleic acids research2022

A subclass of archaeal U8-tRNA sulfurases requires a [4Fe-4S] cluster for catalysis.

Nisha He, Jingjing Zhou, Ornella Bimai, Jonathan Oltmanns, Jean-Luc Ravanat, Christophe Velours, Volker Schünemann, Marc Fontecave, Béatrice Golinelli-Pimpaneau

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Structure-based insights into the mechanism of [4Fe-4S]-dependent sulfur insertase LarE.Protein science : a publication of the Protein Society · 2024
    Article
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Nisha HeLaboratoire de Chimie des Processus Biologiques, Collège de France, CNRS, Sorbonne Université, 11 Place Marcelin Berthelot, 75231 Paris cedex 05, France.
Jingjing ZhouLaboratoire de Chimie des Processus Biologiques, Collège de France, CNRS, Sorbonne Université, 11 Place Marcelin Berthelot, 75231 Paris cedex 05, France.
Ornella BimaiLaboratoire de Chimie des Processus Biologiques, Collège de France, CNRS, Sorbonne Université, 11 Place Marcelin Berthelot, 75231 Paris cedex 05, France.
Jonathan OltmannsTechnische Universität Kaiserslautern, Fachbereich Physik, Erwin-Schrödinger-Str. 46, D-67663 Kaiserslautern, Germany.
Jean-Luc RavanatUniversity of Grenoble Alpes, CEA, CNRS, IRIG, SyMMES UMR 5819, F-38000 Grenoble, France.
Christophe VeloursInstitute for Integrative Biology of the Cell (I2BC), CEA, CNRS, Université Paris-Saclay, Avenue de la Terrasse, 91198 Gif-sur-Yvette cedex, France.
Volker SchünemannTechnische Universität Kaiserslautern, Fachbereich Physik, Erwin-Schrödinger-Str. 46, D-67663 Kaiserslautern, Germany.
Marc FontecaveLaboratoire de Chimie des Processus Biologiques, Collège de France, CNRS, Sorbonne Université, 11 Place Marcelin Berthelot, 75231 Paris cedex 05, France.
Béatrice Golinelli-PimpaneauLaboratoire de Chimie des Processus Biologiques, Collège de France, CNRS, Sorbonne Université, 11 Place Marcelin Berthelot, 75231 Paris cedex 05, France.ORCID 0000-0001-8248-4704
Centre National de la Recherche Scientifique · FRUniversity of Kaiserslautern · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sulfuration of uridine 8, in bacterial and archaeal tRNAs, is catalyzed by enzymes formerly known as ThiI, but renamed here TtuI. Two different classes of TtuI proteins, which possess a PP-loop-containing pyrophosphatase domain that includes a conserved cysteine important for catalysis, have been identified. The first class, as exemplified by the prototypic Escherichia coli enzyme, possesses an additional C-terminal rhodanese domain harboring a second cysteine, which serves to form a catalytic persulfide. Among the second class of TtuI proteins that do not possess the rhodanese domain, some archaeal proteins display a conserved CXXC + C motif. We report here spectroscopic and enzymatic studies showing that TtuI from Methanococcus maripaludis and Pyrococcus furiosus can assemble a [4Fe-4S] cluster that is essential for tRNA sulfuration activity. Moreover, structural modeling studies, together with previously reported mutagenesis experiments of M. maripaludis TtuI, indicate that the [4Fe-4S] cluster is coordinated by the three cysteines of the CXXC + C motif. Altogether, our results raise a novel mechanism for U8-tRNA sulfuration, in which the cluster is proposed to catalyze the transfer of sulfur atoms to the activated tRNA substrate.

Indexed as

ArchaeaCysteineIron-Sulfur ProteinsRNA, TransferThiosulfate SulfurtransferaseAmino Acid MotifsArchaeal ProteinsBacterial ProteinsCatalysisMutagenesisProtein DomainsArchaeal ProteinsBacterial ProteinsCysteineIron-Sulfur ProteinsRNA, TransferThiosulfate Sulfurtransferase

Identifiers

PMID36533440
PMCPMC9825150
OpenAlexW4311880119

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.