Evidence map›Paper›PMID 36533150›Full record

ArticleVirus evolution2022

Disentangling the role of poultry farms and wild birds in the spread of highly pathogenic avian influenza virus in Europe.

Claire Guinat, Cecilia Valenzuela Agüí, Timothy G Vaughan, Jérémie Scire, Anne Pohlmann, Christoph Staubach, Jacqueline King, Edyta Świętoń, Ádám Dán, Lenka Černíková and 2 more

Open access · goldAbstract read
In one paragraph

Article in Virus evolution, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
3.0field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 5 countries.

Claire GuinatDepartment of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse, Basel 4058, Switzerland.ORCID https://orcid.org/0000-0002-8245-9290
Cecilia Valenzuela AgüíDepartment of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse, Basel 4058, Switzerland.ORCID https://orcid.org/0000-0002-2774-4822
Timothy G VaughanDepartment of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse, Basel 4058, Switzerland.ORCID https://orcid.org/0000-0001-6220-2239
Jérémie ScireDepartment of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse, Basel 4058, Switzerland.
Anne PohlmannFriedrich-Loeffler-Institut, Suedufer 10, Greifswald - Insel Riems 17489, Germany.ORCID https://orcid.org/0000-0002-5318-665X
Christoph StaubachFriedrich-Loeffler-Institut, Suedufer 10, Greifswald - Insel Riems 17489, Germany.
Jacqueline KingFriedrich-Loeffler-Institut, Suedufer 10, Greifswald - Insel Riems 17489, Germany.ORCID https://orcid.org/0000-0003-1857-7660
Edyta ŚwiętońDepartment of Poultry Diseases, National Veterinary Research Institute, Al. Partyzantow 57, Pulawy 24-100, Poland.ORCID https://orcid.org/0000-0002-1571-3279
Ádám DánDaNAm Vet Molbiol, Herman Ottó utca 5, Kőszeg 9730, Hungary.
Lenka ČerníkováState Veterinary Institute Prague, Sidlistni 136/24, Prague 165 03, Czech Republic.
Mariette F DucatezIHAP, Université de Toulouse, INRAE, ENVT, 23 chemin des capelles, Toulouse 31076, France.ORCID https://orcid.org/0000-0001-9632-5499
Tanja StadlerDepartment of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse, Basel 4058, Switzerland.ORCID https://orcid.org/0000-0001-6431-535X
SIB Swiss Institute of Bioinformatics · CHFriedrich-Loeffler-Institut · DEÉcole Nationale Vétérinaire de Toulouse · FRNational Veterinary Research Institute · PLState Veterinary Administration · CZ

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In winter 2016-7, Europe was severely hit by an unprecedented epidemic of highly pathogenic avian influenza viruses (HPAIVs), causing a significant impact on animal health, wildlife conservation, and livestock economic sustainability. By applying phylodynamic tools to virus sequences collected during the epidemic, we investigated when the first infections occurred, how many infections were unreported, which factors influenced virus spread, and how many spillover events occurred. HPAIV was likely introduced into poultry farms during the autumn, in line with the timing of wild birds' migration. In Germany, Hungary, and Poland, the epidemic was dominated by farm-to-farm transmission, showing that understanding of how farms are connected would greatly help control efforts. In the Czech Republic, the epidemic was dominated by wild bird-to-farm transmission, implying that more sustainable prevention strategies should be developed to reduce HPAIV exposure from wild birds. Inferred transmission parameters will be useful to parameterize predictive models of HPAIV spread. None of the predictors related to live poultry trade, poultry census, and geographic proximity were identified as supportive predictors of HPAIV spread between farms across borders. These results are crucial to better understand HPAIV transmission dynamics at the domestic-wildlife interface with the view to reduce the impact of future epidemics.

Indexed as

domestic–wildlife interfacehighly pathogenic avian influenzaphylodynamicsvirus transmission and evolution

Identifiers

PMID36533150
PMCPMC9752641
OpenAlexW4292210586

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.