Evidence map›Paper›PMID 36530410›Full record

ArticlePeerJ2022

DNA barcoding unveils a high diversity of caddisflies (Trichoptera) in the Mount Halimun Salak National Park (West Java; Indonesia).

Isabel C Kilian, Marianne Espeland, Wolfram Mey, Daisy Wowor, Renny K Hadiaty, Thomas von Rintelen, Fabian Herder

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Isabel C KilianMuseum Koenig, Leibniz Institute for the Analysis of Biodiversity Change, Bonn, Germany.
Marianne EspelandMuseum Koenig, Leibniz Institute for the Analysis of Biodiversity Change, Bonn, Germany.ORCID 0000-0002-6800-4783
Wolfram MeyMuseum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany.
Daisy WoworMuseum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency, Cibinong, Indonesia.ORCID 0000-0002-4837-666X
Renny K HadiatyMuseum Zoologicum Bogoriense, Research Center for Biosystematics and Evolution, National Research and Innovation Agency, Cibinong, Indonesia.
Thomas von RintelenMuseum für Naturkunde, Leibniz Institute for Evolution and Biodiversity Science, Berlin, Germany.
Fabian HerderMuseum Koenig, Leibniz Institute for the Analysis of Biodiversity Change, Bonn, Germany.
Zoological Research Museum Alexander Koenig · DEMuseum für Naturkunde · DENational Research and Innovation Agency · ID

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Trichoptera are one of the most diverse groups of freshwater insects worldwide and one of the main bioindicators for freshwater quality. However, in many areas, caddisflies remain understudied due to lack of taxonomic expertise. Meanwhile, globally increasing anthropogenic stress on freshwater streams also threatens Trichoptera diversity. Methods: To assess the Trichoptera diversity of the area within and around the Mount Halimun Salak National Park (MHSNP or Taman Nasional Gunung Halimun Salak) in West Java (Indonesia), we conducted a molecular-morphological study on Trichoptera diversity using larvae from a benthic survey and adults from hand-netting. In addition to morphological identification, we applied four different molecular taxon delimitation approaches (Generalized Mixed Yule Coalescent, Bayesian Poisson Tree Processes, Automatic Barcode Gap Discovery and Assemble Species by Automatic Partitioning) based on DNA barcoding of Cytochrome-C-Oxidase I (COI). Results: The molecular delimitation detected 72 to 81 Operational Taxonomic Units (OTU). Only five OTUs could be identified to species level by comparing sequences against the BOLD database using BLAST, and four more to the genus level. Adults and larvae could be successfully associated in 18 cases across six families. The high diversity of Trichoptera in this area highlights their potential as bioindicators for water quality assessment. Conclusions: This study provides an example of how molecular approaches can benefit the exploration of hidden diversity in unexplored areas and can be a valuable tool to link life stages. However, our study also highlights the need to improve DNA barcode reference libraries of Trichoptera for the Oriental region.

Indexed as

DNA Barcoding, TaxonomicHolometabolaAnimalsBayes TheoremDNAEnvironmental BiomarkersIndonesiaInsectaLarvaParks, RecreationalPhylogenyDNAEnvironmental BiomarkersAssemble species by automatic partitioningAutomatic barcode gap discoveryBayesian poisson tree processesFreshwaterGeneralized mixed yule coalescentLarval-adult associationMitochondrial COISpecies boundarySpecies delimitation

Identifiers

PMID36530410
PMCPMC9753737
OpenAlexW4312065114

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.