Evidence map›Paper›PMID 36529516›Full record

ArticleCell structure and function2023

Enhancement of Vivid-based photo-activatable Gal4 transcription factor in mammalian cells.

Shinji C Nagasaki, Tomonori D Fukuda, Mayumi Yamada, Yusuke Iii Suzuki, Ryo Kakutani, Adam T Guy, Itaru Imayoshi

Open access · goldAbstract read
In one paragraph

Article in Cell structure and function, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Shinji C NagasakiLaboratory of Brain Development and Regeneration, Graduate School of Biostudies, Kyoto University.
Tomonori D FukudaLaboratory of Brain Development and Regeneration, Graduate School of Biostudies, Kyoto University.
Mayumi YamadaLaboratory of Brain Development and Regeneration, Graduate School of Biostudies, Kyoto University.
Yusuke Iii SuzukiLaboratory of Brain Development and Regeneration, Graduate School of Biostudies, Kyoto University.
Ryo KakutaniLaboratory of Cell Biology, Institute for Life and Medical Sciences, Kyoto University.
Adam T GuyLaboratory of Brain Development and Regeneration, Graduate School of Biostudies, Kyoto University.
Itaru ImayoshiLaboratory of Brain Development and Regeneration, Graduate School of Biostudies, Kyoto University.
Kyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Gal4/UAS system is a versatile tool to manipulate exogenous gene expression of cells spatially and temporally in many model organisms. Many variations of light-controllable Gal4/UAS system are now available, following the development of photo-activatable (PA) molecular switches and integration of these tools. However, many PA-Gal4 transcription factors have undesired background transcription activities even in dark conditions, and this severely attenuates reliable light-controlled gene expression. Therefore, it is important to develop reliable PA-Gal4 transcription factors with robust light-induced gene expression and limited background activity. By optimization of synthetic PA-Gal4 transcription factors, we have validated configurations of Gal4 DNA biding domain, transcription activation domain and blue light-dependent dimer formation molecule Vivid (VVD), and applied types of transcription activation domains to develop a new PA-Gal4 transcription factor we have named eGAV (enhanced Gal4-VVD transcription factor). Background activity of eGAV in dark conditions was significantly lower than that of hGAVPO, a commonly used PA-Gal4 transcription factor, and maximum light-induced gene expression levels were also improved. Light-controlled gene expression was verified in cultured HEK293T cells with plasmid-transient transfections, and in mouse EpH4 cells with lentivirus vector-mediated transduction. Furthermore, light-controlled eGAV-mediated transcription was confirmed in transfected neural stem cells and progenitors in developing and adult mouse brain and chick spinal cord, and in adult mouse hepatocytes, demonstrating that eGAV can be applied to a wide range of experimental systems and model organisms.Key words: optogenetics, Gal4/UAS system, transcription, gene expression, Vivid.

Indexed as

OptogeneticsTranscription FactorsAnimalsCells, CulturedGene Expression RegulationHEK293 CellsHumansMammalsMiceTranscription Factors, GeneralTranscription FactorsTranscription Factors, GeneralGal4/UAS systemgene expressionoptogeneticstranscriptionVivid

Identifiers

PMID36529516
PMCPMC10721950
OpenAlexW4311928552

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.