Evidence map›Paper›PMID 36528715›Full record

ArticleCommunications biology2022

Personalized visual encoding model construction with small data.

Zijin Gu, Keith Jamison, Mert Sabuncu, Amy Kuceyeski

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. A Framework for Interpretability in Machine Learning for Medical Imaging.IEEE access : practical innovations, open solutions · 2024
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Zijin GuSchool of Electrical and Computer Engineering, Cornell University, Ithaca, NY, USA.ORCID 0000-0002-0385-2677
Keith JamisonDepartment of Radiology, Weill Cornell Medicine, New York, NY, USA.
Mert SabuncuSchool of Electrical and Computer Engineering, Cornell University, Ithaca, NY, USA.
Amy KuceyeskiDepartment of Radiology, Weill Cornell Medicine, New York, NY, USA. amk2012@med.cornell.edu.ORCID 0000-0002-5050-8342
Cornell University · US

Funding

Multi-Modal Imaging of the Mechanisms Underlying Impaired Executive Attention After Traumatic Brain InjuryR01NS102646 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI KUCEYESKI, AMY FRANCES, SHAH, SUDHIN · 2018 to 2022
$2.8M
Advanced machine learning algorithms that integrate genomewide, longitudinal MRI and demographic data to predict future cognitive decline toward dementiaR01AG053949 · NIA · WEILL MEDICAL COLL OF CORNELL UNIV · PI SABUNCU, MERT RORY · 2017 to 2021
$2.4M
Novel Bioinformatics Strategies to Study Associations Between Genetic Variants and Neuroanatomical ShapeR01LM012719 · NLM · CORNELL UNIVERSITY · PI SABUNCU, MERT RORY · 2017 to 2020
$1.4M
Heritability and cognitive implications of structural-functional connectome couplingRF1MH123232 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI KUCEYESKI, AMY FRANCES · 2021 to 2021
$1.3M
ELECTRON MICROSCOPY OF NEURONS, AXONS &SYNAPSESR01NS010264 · NINDS · KANSAS STATE UNIVERSITY · PI WESTFALL, JANE A · 1985 to 1989
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NIA NIH HHS AG053949NIA NIH HHS R01 AG053949NIMH NIH HHS MH123232NIMH NIH HHS RF1 MH123232NINDS NIH HHS NS10264NINDS NIH HHS R01 NS102646NLM NIH HHS LM012719NLM NIH HHS R01 LM012719
6 · The paper itself

Abstract

Quantifying population heterogeneity in brain stimuli-response mapping may allow insight into variability in bottom-up neural systems that can in turn be related to individual's behavior or pathological state. Encoding models that predict brain responses to stimuli are one way to capture this relationship. However, they generally need a large amount of fMRI data to achieve optimal accuracy. Here, we propose an ensemble approach to create encoding models for novel individuals with relatively little data by modeling each subject's predicted response vector as a linear combination of the other subjects' predicted response vectors. We show that these ensemble encoding models trained with hundreds of image-response pairs, achieve accuracy not different from models trained on 20,000 image-response pairs. Importantly, the ensemble encoding models preserve patterns of inter-individual differences in the image-response relationship. We also show the proposed approach is robust against domain shift by validating on data with a different scanner and experimental setup. Additionally, we show that the ensemble encoding models are able to discover the inter-individual differences in various face areas' responses to images of animal vs human faces using a recently developed NeuroGen framework. Our approach shows the potential to use existing densely-sampled data, i.e. large amounts of data collected from a single individual, to efficiently create accurate, personalized encoding models and, subsequently, personalized optimal synthetic images for new individuals scanned under different experimental conditions.

Indexed as

Brain MappingMagnetic Resonance ImagingAnimalsBrainHumans

Identifiers

PMID36528715
PMCPMC9759560
OpenAlexW4311696967

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.