Evidence map›Paper›PMID 36528109›Full record

ArticleFertility and sterility2023

Whole genome bisulfite sequencing of sperm reveals differentially methylated regions in male partners of idiopathic recurrent pregnancy loss cases.

Delna Irani, Nafisa Balasinor, Vandana Bansal, Deepti Tandon, Anushree Patil, Dipty Singh

Open access · bronzeAbstract read
PubMed Publisher
In one paragraph

Article in Fertility and sterility, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Delna IraniDepartment of Neuroendocrinology, ICMR - National Institute for Research in Reproductive and Child Health, Mumbai, India.
Nafisa BalasinorDepartment of Neuroendocrinology, ICMR - National Institute for Research in Reproductive and Child Health, Mumbai, India.
Vandana BansalDepartment of Obstetrics and Gynaecology, Nowrosjee Wadia Maternity Hospital, Mumbai, India.
Deepti TandonDepartment of Clinical Research, ICMR - National Institute for Research in Reproductive and Child Health, Mumbai, India.
Anushree PatilDepartment of Clinical Research, ICMR - National Institute for Research in Reproductive and Child Health, Mumbai, India.
Dipty SinghDepartment of Neuroendocrinology, ICMR - National Institute for Research in Reproductive and Child Health, Mumbai, India. Electronic address: singhd@nirrch.res.in.
National Institute for Research in Reproductive Health · INBai Jerbai Wadia Hospital for Children · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveTo study the genome wide alterations in sperm DNA methylation in male partners of idiopathic recurrent pregnancy loss (iRPL) cases and note regions as potential diagnostic markers.

designCase-control study and methylome analysis of human sperm.

settingObstetrics and Gynaecology clinics. PATIENT(S): Control group consists of apparently healthy fertile men having fathered a child within the last 2 years (n = 39); and case group consists of male partners of iRPL cases having ≥2 consecutive 1st trimester pregnancy losses (n = 47). INTERVENTION(S): None. MAIN OUTCOME MEASURE(S): Sperm DNA samples of controls and cases were selected for whole genome bisulfite sequencing analysis based on the previously set thresholds of global methylation levels and methylation levels of imprinted genes (KvDMR and ZAC). Whole genome bisulfite sequencing of selected sperm genomic DNA was performed to identify differentially methylated CpG sites of iRPL cases compared with fertile controls. Pathway analysis of all the differentially methylated genes was done by Database for Annotation, Visualization, and Integrated Discovery annotation tool and Kyoto Encyclopedia of Genes and Genomes tool. Differentially methylated CpGs within genes relevant to embryo and placenta development were selected to further validate their methylation levels in study population by pyrosequencing. RESULT(S): A total of 9497 differentially methylated CpGs with highest enrichment in intronic regions were obtained. In addition, 5352 differentially methylated regions and 2087 differentially methylated genes were noted. Signaling pathways involved in development were enriched on pathway analysis. Select CpGs within genes PPARG, KCNQ1, SETD2, and MAP3K4 showed distinct hypomethylated subpopulations within iRPL study population. CONCLUSION(S): Our study highlights the altered methylation landscape of iRPL sperm, and their possible implications in pathways of embryo and placental development. The CpG sites that are hypomethylated specifically in sperm of iRPL subpopulation can be further assessed as predictive biomarkers.

Indexed as

Abortion, HabitualDNA MethylationPlacentaSpermatozoaCase-Control StudiesCpG IslandsEmbryonic DevelopmentFemaleHumansMalePregnancySemenSulfitesWhole Genome Sequencinghydrogen sulfiteSulfitesembryo developmentIdiopathic recurrent pregnancy lossplacenta developmentsperm DNA methylationwhole genome bisulfite sequencing

Identifiers

PMID36528109
OpenAlexW4311360525

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.