Evidence map›Paper›PMID 36526968›Full record

ArticleBMC plant biology2022

Transcriptome profiling provides insights into leaf color changes in two Acer palmatum genotypes.

Lu Zhu, Jing Wen, Qiuyue Ma, Kunyuan Yan, Yiming Du, Zhu Chen, Xiaoyu Lu, Jie Ren, Yuelan Wang, Shushun Li and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  5. Molecular Mechanisms of Chlorophyll Deficiency inPlants (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Lu ZhuInstitute of Leisure Agriculture, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, 210014, Nanjing, Jiangsu, China.
Jing WenInstitute of Leisure Agriculture, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, 210014, Nanjing, Jiangsu, China.
Qiuyue MaInstitute of Leisure Agriculture, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, 210014, Nanjing, Jiangsu, China.
Kunyuan YanInstitute of Leisure Agriculture, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, 210014, Nanjing, Jiangsu, China.
Yiming DuInstitute of Leisure Agriculture, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, 210014, Nanjing, Jiangsu, China.
Zhu ChenInstitute of Agricultural Engineering, Anhui Academy of Agricultural Sciences, 40 Nongke South Road, 230031, Hefei, Anhui, China.
Xiaoyu LuInstitute of Agricultural Engineering, Anhui Academy of Agricultural Sciences, 40 Nongke South Road, 230031, Hefei, Anhui, China.
Jie RenInstitute of Agricultural Engineering, Anhui Academy of Agricultural Sciences, 40 Nongke South Road, 230031, Hefei, Anhui, China.
Yuelan WangChenshi Maples Nursery, 313308, Longba Village, Huzhou, Zhejiang, China.
Shushun LiInstitute of Leisure Agriculture, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, 210014, Nanjing, Jiangsu, China. shushunli@jaas.ac.cn.
Qianzhong LiInstitute of Leisure Agriculture, Jiangsu Academy of Agricultural Sciences, 50 Zhongling Street, 210014, Nanjing, Jiangsu, China. qianzhongli@jaas.ac.cn.
Jiangsu Academy of Agricultural Sciences · CNAnhui Academy of Agricultural Sciences · CN

Funding

Jiangsu Agriculture Science and Technology Innovation Fund CX(21)2032National Natural Science Foundation of China 32001357Natural Science Foundation of Jiangsu Province BK20211139
6 · The paper itself

Abstract

backgroundOrnamental trees with seasonally-dependent leaf color, such as Acer palmatum, have gained worldwide popularity. Leaf color is a main determinant of the ornamental and economic value of A. palmatum. However, the molecular mechanisms responsible for leaf color changes remain unclear.

resultsWe chose A. palmatum cultivars with yellow ('Jinling Huangfeng') and red ('Jinling Danfeng') leaves as the ideal material for studying the complex metabolic networks responsible for variations in leaf coloration. The 24 libraries obtained from four different time points in the growth of 'Jinling Huangfeng' and 'Jinling Danfeng' was subjected to Illumina high-throughput sequencing. We observed that the difference in cyanidin and delphinidin content is the primary reason behind the varying coloration of the leaves. Transcriptomic analyses revealed 225,684 unigenes, and the Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis of differentially expressed genes (DEGs) confirmed that they were involved in 'anthocyanin biosynthesis.' Eighteen structural genes involved in anthocyanin biosynthesis were thought to be related to anthocyanin accumulation, whereas 46 MYBs, 33 basic helix-loop-helixs (bHLHs), and 29 WD40s were presumed to be involved in regulating anthocyanin biosynthesis. Based on weighted gene co-expression network analysis (WGCNA), three candidate genes (ApRHOMBOID, ApMAPK, and ApUNE10) were screened in the significant association module with a correlation coefficient (r

conclusionIn this study, the leaf color changes of two A. palmatum genotypes were analyzed. These findings provide novel insights into variations in leaf coloration and suggest pathways for targeted genetic improvements in A. palmatum.

Indexed as

AcerAnthocyaninsColorGene Expression ProfilingGene Expression Regulation, PlantGenotypePigmentationTranscriptomeAnthocyaninsAcer palmatumAnthocyaninLeaf colorationTranscription factorsTranscriptome

Identifiers

PMID36526968
PMCPMC9756493
OpenAlexW4312066720

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.