Evidence map›Paper›PMID 36525831›Full record

ArticleComputers in biology and medicine2023

Hierarchical particle optimization for cortical shape correspondence in temporal lobe resection.

Yue Liu, Shunxing Bao, Dario J Englot, Victoria L Morgan, Warren D Taylor, Ying Wei, Ipek Oguz, Bennett A Landman, Ilwoo Lyu

Open access · greenAbstract read
In one paragraph

Article in Computers in biology and medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Yue LiuCollege of Information Science and Engineering, Northeastern University, Shenyang, China; Department of Electrical Engineering and Computer Science, Vanderbilt University, TN, USA.
Shunxing BaoDepartment of Electrical Engineering and Computer Science, Vanderbilt University, TN, USA.
Dario J EnglotDepartment of Neurological Surgery, Vanderbilt University Medical Center, TN, USA.
Victoria L MorganDepartment of Radiology & Radiological Science, Vanderbilt University Medical Center, TN, USA.
Warren D TaylorDepartment of Psychiatry & Behavioral Science, Vanderbilt University Medical Center, TN, USA.
Ying WeiCollege of Information Science and Engineering, Northeastern University, Shenyang, China; Information Technology R&D Innovation Center of Peking University, Shaoxing, China; Changsha Hisense Intelligent System Research Institute Co., Ltd, China.
Ipek OguzDepartment of Electrical Engineering and Computer Science, Vanderbilt University, TN, USA.
Bennett A LandmanDepartment of Electrical Engineering and Computer Science, Vanderbilt University, TN, USA.
Ilwoo LyuDepartment of Computer Science and Engineering, UNIST, Ulsan, South Korea. Electronic address: ilwoolyu@unist.ac.kr.
Vanderbilt University · USVanderbilt University Medical Center · USNeurological Surgery · USPeking University · CNUlsan National Institute of Science and Technology · KR

Funding

Overall: Eunice Kennedy Shriver Intellectual and Developmental Disabilities Research Center at VanderbiltP50HD103537 · NICHD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Jeffrey L Neul · 2020 to 2026
$10.3M
Relating Vigilance to Connectivity and Neurocognition in Temporal Lobe EpilepsyR01NS112252 · NINDS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ENGLOT, DARIO J · 2019 to 2023
$3.0M
The Role of Network Connectivity in Post-Surgical Seizure Recurrence in Temporal Lobe EpilepsyR01NS110130 · NINDS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MORGAN, VICTORIA L · 2018 to 2023
$2.5M
MRI Connectivity Biomarkers of Treatment Response in Focal EpilepsyR01NS108445 · NINDS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MORGAN, VICTORIA L · 2019 to 2024
$2.5M
MRI Structural and Functional Connectivity Changes in Temporal Lobe EpilepsyR01NS075270 · NINDS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MORGAN, VICTORIA L · 2012 to 2016
$1.7M
MULTIMODAL MAPPING OF SUBCORTICAL AND CORTICAL FUNCTIONAL NETWORK DISTURBANCES IN FOCAL EPILEPSYR00NS097618 · NINDS · VANDERBILT UNIVERSITY MEDICAL CENTER · PI ENGLOT, DARIO J · 2017 to 2019
$743k
NICHD NIH HHS P50 HD103537NINDS NIH HHS R00 NS097618NINDS NIH HHS R01 NS075270NINDS NIH HHS R01 NS108445NINDS NIH HHS R01 NS110130NINDS NIH HHS R01 NS112252
6 · The paper itself

Abstract

backgroundAnterior temporal lobe resection is an effective treatment for temporal lobe epilepsy. The post-surgical structural changes could influence the follow-up treatment. Capturing post-surgical changes necessitates a well-established cortical shape correspondence between pre- and post-surgical surfaces. Yet, most cortical surface registration methods are designed for normal neuroanatomy. Surgical changes can introduce wide ranging artifacts in correspondence, for which conventional surface registration methods may not work as intended.

methodsIn this paper, we propose a novel particle method for one-to-one dense shape correspondence between pre- and post-surgical surfaces with temporal lobe resection. The proposed method can handle partial structural abnormality involving non-rigid changes. Unlike existing particle methods using implicit particle adjacency, we consider explicit particle adjacency to establish a smooth correspondence. Moreover, we propose hierarchical optimization of particles rather than full optimization of all particles at once to avoid trappings of locally optimal particle update.

resultsWe evaluate the proposed method on 25 pairs of T1-MRI with pre- and post-simulated resection on the anterior temporal lobe and 25 pairs of patients with actual resection. We show improved accuracy over several cortical regions in terms of ROI boundary Hausdorff distance with 4.29 mm and Dice similarity coefficients with average value 0.841, compared to existing surface registration methods on simulated data. In 25 patients with actual resection of the anterior temporal lobe, our method shows an improved shape correspondence in qualitative and quantitative evaluation on parcellation-off ratio with average value 0.061 and cortical thickness changes. We also show better smoothness of the correspondence without self-intersection, compared with point-wise matching methods which show various degrees of self-intersection.

conclusionThe proposed method establishes a promising one-to-one dense shape correspondence for temporal lobe resection. The resulting correspondence is smooth without self-intersection. The proposed hierarchical optimization strategy could accelerate optimization and improve the optimization accuracy. According to the results on the paired surfaces with temporal lobe resection, the proposed method outperforms the compared methods and is more reliable to capture cortical thickness changes.

Indexed as

Epilepsy, Temporal LobeTemporal LobeHumansMagnetic Resonance ImagingTreatment OutcomeHierarchical particle optimizationShape correspondenceTemporal lobe resection

Identifiers

PMID36525831
PMCPMC9832438
OpenAlexW4311174406

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.