Evidence map›Paper›PMID 36525425›Full record

ArticlePloS one2022

Factors that influence the pancreatic and duodenal microbiome in patients undergoing pancreatic surgery.

Eline S Zwart, Suzanne Jeleniewski, Lenka N C Boyd, Laura L Meijer, Jisce R Puik, Barbara M Zonderhuis, Freek Daams, Andries E Budding, Reina E Mebius, Geert Kazemier

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 6 citations in OpenAlex.

  1. Pooled it
  2. Duodenal and pancreatic tissue microbiome profiles of PPI users and non-users.Pancreatology : official journal of the International Association of Pancreatology (IAP) ... [et al.] · 2024
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Eline S ZwartDepartment of Surgery, Cancer Center Amsterdam, Amsterdam Universities Medical Centers, VU University, Amsterdam, The Netherlands.ORCID 0000-0002-2121-8039
Suzanne JeleniewskiInBiome, Amsterdam, The Netherlands.
Lenka N C BoydDepartment of Surgery, Cancer Center Amsterdam, Amsterdam Universities Medical Centers, VU University, Amsterdam, The Netherlands.
Laura L MeijerDepartment of Surgery, Cancer Center Amsterdam, Amsterdam Universities Medical Centers, VU University, Amsterdam, The Netherlands.ORCID 0000-0001-5909-9314
Jisce R PuikDepartment of Surgery, Cancer Center Amsterdam, Amsterdam Universities Medical Centers, VU University, Amsterdam, The Netherlands.
Barbara M ZonderhuisDepartment of Surgery, Cancer Center Amsterdam, Amsterdam Universities Medical Centers, VU University, Amsterdam, The Netherlands.
Freek DaamsDepartment of Surgery, Cancer Center Amsterdam, Amsterdam Universities Medical Centers, VU University, Amsterdam, The Netherlands.
Andries E BuddingInBiome, Amsterdam, The Netherlands.
Reina E MebiusDepartment of Molecular Cell Biology and Immunology, Amsterdam Universities Medical Centers, VU University, Amsterdam, The Netherlands.
Geert KazemierDepartment of Surgery, Cancer Center Amsterdam, Amsterdam Universities Medical Centers, VU University, Amsterdam, The Netherlands.
Amsterdam University Medical Centers · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND/

objectivesThis study examined the correlation between pancreatic microbiome and patients characteristics. Furthermore, we compared different duodenal materials to examine their reflection of the pancreatic microbiome.

methodsPatients undergoing pancreatic surgery were included in the study. Characteristics of those patients were prospectively registered and sterile pancreatic biopsies were collected during surgery. After completion of the resection, duodenal fluid, -tissue and -swab were collected. Bacterial DNA was extracted and analyzed with IS-pro assay.

resultsPaired samples of 51 patients were available for evaluation, including pancreatic biopsies from all patients, 22 duodenal fluids, 21 duodenal swabs and 11 duodenal tissues. The pancreatic microbiome consisted mostly of Proteobacteria followed by Firmicutes, Actinobacteria, Fusobacteria and Verrucomicrobia (FAFV) and Bacteroidetes. On species level, Enterococcus faecalis, Escherichia coli, and Enterobacter-Klebsiella were most abundant. In pancreatic biopsies, the total bacterial load and Proteobacteria load were significantly higher in patients with biliary drainage (54618.0 vs 5623.5; 9119.0 vs 2067.1). Patients who used proton pump inhibitors had a significantly higher total bacterial load (115964.7 vs 8495.8), more FAFV (66862.9 vs 1890.1), more Proteobacteria (24245.9 vs 2951.4) and more Bacteroidetes (542.5 vs 25.8). The head of the pancreas contained significantly more bacteria (21193.4 vs 2096.8) and more FAFV (5225.7 vs 19.0) compared to the tail, regardless of biliary drainage. Furthermore, the microbiome of all duodenal materials showed a weak correlation with the pancreatic microbiome.

conclusionBiliary drainage, use of proton pump inhibitors, and anatomic location of the pancreatic biopsy influence the pancreatic microbiome. Furthermore, the duodenal microbiome does not suffice as a surrogate for the pancreatic microbiome.

Indexed as

MicrobiotaProton Pump InhibitorsBacteriaBacteroidetesDuodenumFusobacteriaHumansPancreasProteobacteriaRNA, Ribosomal, 16SProton Pump InhibitorsRNA, Ribosomal, 16S

Identifiers

PMID36525425
PMCPMC9757549
OpenAlexW4311684344

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.