ArticleGenome biology2022
Automated assembly scaffolding using RagTag elevates a new tomato system for high-throughput genome editing.
Article in Genome biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 672 papers.
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672 citing papers in PubMed.
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612 more citing papers are in PubMed but not listed here.
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Authors and funding
10 authors.
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Abstract
Advancing crop genomics requires efficient genetic systems enabled by high-quality personalized genome assemblies. Here, we introduce RagTag, a toolset for automating assembly scaffolding and patching, and we establish chromosome-scale reference genomes for the widely used tomato genotype M82 along with Sweet-100, a new rapid-cycling genotype that we developed to accelerate functional genomics and genome editing in tomato. This work outlines strategies to rapidly expand genetic systems and genomic resources in other plant species.
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