Evidence map›Paper›PMID 36522348›Full record

ArticleNature communications2022

Sequence-specific capture and concentration of viral RNA by type III CRISPR system enhances diagnostic.

Anna Nemudraia, Artem Nemudryi, Murat Buyukyoruk, Andrew M Scherffius, Trevor Zahl, Tanner Wiegand, Shishir Pandey, Joseph E Nichols, Laina N Hall, Aidan McVey and 7 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Expanding the CRISPR/Cas toolkit: applications in proteomics and theranostics.Frontiers in bioengineering and biotechnology · 2025
    Review
  6. Article
  7. Article
  8. Article
  9. CRISPR-based nucleic acid diagnostics for pathogens.Trends in analytical chemistry : TRAC · 2023
    Review
  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Anna Nemudraia *Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.
Artem Nemudryi *Department of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.ORCID 0000-0003-0121-1363
Murat BuyukyorukDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.
Andrew M ScherffiusDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.
Trevor ZahlDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.
Tanner WiegandDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.ORCID 0000-0002-0528-268X
Shishir PandeyDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.
Joseph E NicholsDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.
Laina N HallDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.
Aidan McVeyDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.
Helen H LeeDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.
Royce A WilkinsonDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA.ORCID 0000-0001-8831-2081
Laura R SnyderDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48105, USA.
Joshua D JonesDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48105, USA.ORCID 0000-0002-8811-1340
Kristin S KoutmouDepartment of Chemistry, University of Michigan, Ann Arbor, MI, 48105, USA.ORCID 0000-0002-7763-9262
Andrew Santiago-FrangosDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA. andrew.santiagofrangos@gmail.com.ORCID 0000-0001-9615-065X
Blake WiedenheftDepartment of Microbiology and Cell Biology, Montana State University, Bozeman, MT, 59717, USA. bwiedenheft@gmail.com.ORCID 0000-0001-9297-5304
Montana State University · USUniversity of Michigan · US

Funding

Structural and functional understanding of bacterial defense and viral counter defenseR35GM134867 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI Blake A Wiedenheft · 2020 to 2026
$3.8M
Mechanisms of translational controlR35GM128836 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Kristin S Koutmou · 2018 to 2026
$3.2M
CRISPR-based editing of RNA and cellular mechanisms that govern RNA repairK99AI171893 · NIAID · MONTANA STATE UNIVERSITY - BOZEMAN · PI NEMUDRYI, ARTEM ALEKSANDROVICH · 2022 to 2023
$276k
Mechanisms of CRISPR-mediated immunity and applications beyond editingK99GM147842 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI SANTIAGO-FRANGOS, ANDREW · 2022 to 2023
$171k
NIAID NIH HHS K99 AI171893NIGMS NIH HHS K99 GM147842NIGMS NIH HHS R35 GM128836NIGMS NIH HHS R35 GM134867
6 · The paper itself

Abstract

Type-III CRISPR-Cas systems have recently been adopted for sequence-specific detection of SARS-CoV-2. Here, we repurpose the type III-A CRISPR complex from Thermus thermophilus (TtCsm) for programmable capture and concentration of specific RNAs from complex mixtures. The target bound TtCsm complex generates two cyclic oligoadenylates (i.e., cA

Indexed as

COVID-19CRISPR-Cas SystemsRNA, ViralDNAEndonucleasesHumansSARS-CoV-2Thermus thermophilusDNAEndonucleasesRNA, Viral

Identifiers

PMID36522348
PMCPMC9751510
OpenAlexW4311511295

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.