Evidence map›Paper›PMID 36522189›Full record

ArticleProtein science : a publication of the Protein Society2023

N-terminal β-strand in YAP is critical for stronger binding to scalloped relative to TEAD transcription factor.

Fedir Bokhovchuk, Yannick Mesrouze, Marco Meyerhofer, Patrizia Fontana, Catherine Zimmermann, Frédéric Villard, Dirk Erdmann, Joerg Kallen, Clemens Scheufler, Camilo Velez-Vega and 1 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Post-translational modifications in the Protein Data Bank.Acta crystallographica. Section D, Structural biology · 2024
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Fedir BokhovchukDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Yannick MesrouzeDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Marco MeyerhoferDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Patrizia FontanaDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Catherine ZimmermannDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Frédéric VillardChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Dirk ErdmannDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Joerg KallenChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Clemens ScheuflerChemical Biology and Therapeutics, Novartis Institutes for Biomedical Research, Basel, Switzerland.
Camilo Velez-VegaGlobal Discovery Chemistry, Novartis Institutes for Biomedical Research, Cambridge, Massachusetts, USA.
Patrick ChèneDisease Area Oncology, Novartis Institutes for Biomedical Research, Basel, Switzerland.ORCID 0000-0002-6010-9169
Novartis (Switzerland) · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The yes-associated protein (YAP) regulates the transcriptional activity of the TEAD transcription factors that are key in the control of organ morphogenesis. YAP interacts with TEAD via three secondary structure elements: a β-strand, an α-helix, and an Ω-loop. Earlier results have shown that the β-strand has only a marginal contribution in the YAP:TEAD interaction, but we show here that it significantly enhances the affinity of YAP for the Drosophila homolog of TEAD, scalloped (Sd). Nuclear magnetic resonance shows that the β-strand adopts a more rigid conformation once bound to Sd; pre-steady state kinetic measurements show that the YAP:Sd complex is more stable. Although the crystal structures of the YAP:TEAD and YAP:Sd complexes reveal no differences at the binding interface that could explain these results. Molecular Dynamics simulations are in line with our experimental findings regarding β-strand stability and overall binding affinity of YAP to TEAD and Sd. In particular, RMSF, correlated motion and MMGBSA analyses suggest that β-sheet fluctuations play a relevant role in YAP

Indexed as

TEA Domain Transcription FactorsTranscription FactorsDNA-Binding ProteinsGene Expression RegulationProtein BindingProtein Conformation, beta-StrandDNA-Binding ProteinsTEA Domain Transcription FactorsTranscription Factorscorrelated motionsmolecular dynamicsmolecular recognitionTEADYAP

Identifiers

PMID36522189
PMCPMC9798255
OpenAlexW4311675745

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.