Evidence map›Paper›PMID 36521562›Full record

ArticleThe American journal of pathology2023

Transforming Growth Factor-β1 Regulates Peroxisomal Genes/Proteins via Smad Signaling in Idiopathic Pulmonary Fibrosis Fibroblasts and Transgenic Mouse Models.

Gani Oruqaj, Srikanth Karnati, Lakshmi Kanth Kotarkonda, Eistine Boateng, Marek Bartkuhn, Wenming Zhang, Clemens Ruppert, Andreas Günther, Laurent Bartholin, Wei Shi and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The American journal of pathology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Regulation of inflammatory lung injury and repair by transforming growth factors.American journal of physiology. Lung cellular and molecular physiology · 2025
    Review
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 3 countries.

Gani OruqajInstitute for Anatomy and Cell Biology, Medical Cell Biology, and Biomedical Informatics and Systems Medicine, Giessen, Germany.
Srikanth KarnatiInstitute for Anatomy and Cell Biology, Medical Cell Biology, and Biomedical Informatics and Systems Medicine, Giessen, Germany.
Lakshmi Kanth KotarkondaInstitute for Anatomy and Cell Biology, Medical Cell Biology, and Biomedical Informatics and Systems Medicine, Giessen, Germany.
Eistine BoatengInstitute for Anatomy and Cell Biology, Medical Cell Biology, and Biomedical Informatics and Systems Medicine, Giessen, Germany.
Marek BartkuhnInstitute for Lung Health, Justus Liebig University Giessen, Giessen, Germany.
Wenming ZhangSaban Research Institute, Children's Hospital Los Angeles, Los Angeles, California.
Clemens RuppertDepartment of Internal Medicine, Medical Clinic II, German Center for Lung Research, Universities of Giessen and Marburg Lung Center, Giessen, Germany.
Andreas GüntherDepartment of Internal Medicine, Medical Clinic II, German Center for Lung Research, Universities of Giessen and Marburg Lung Center, Giessen, Germany.
Laurent BartholinINSERM, U590, IFR62, Lyon, France.
Wei ShiSaban Research Institute, Children's Hospital Los Angeles, Los Angeles, California.
Eveline Baumgart-VogtInstitute for Anatomy and Cell Biology, Medical Cell Biology, and Biomedical Informatics and Systems Medicine, Giessen, Germany. Electronic address: eveline.baumgart-vogt@anatomie.med.uni-giessen.de.
Institute of Pathology Celle · DEChildren's Hospital of Los Angeles · USGerman Center for Lung Research · DEInserm · FRJustus-Liebig-Universität Gießen · DEUniversitätsklinikum Gießen und Marburg · DE

Funding

Molecular mechanisms of pulmonary disease in Birt-Hogg-Dube syndromeR01HL141352 · NHLBI · UNIVERSITY OF CINCINNATI · PI SHI, WEI · 2018 to 2021
$2.6M
NHLBI NIH HHS R01 HL141352
6 · The paper itself

Abstract

Idiopathic pulmonary fibrosis (IPF) is a chronic human disease with persistent destruction of lung parenchyma. Transforming growth factor-β1 (TGF-β1) signaling plays a pivotal role in the initiation and pathogenesis of IPF. As shown herein, TGF-β1 signaling down-regulated not only peroxisome biogenesis but also the metabolism of these organelles in human IPF fibroblasts. In vitro cell culture observations in human fibroblasts and human lung tissue indicated that peroxisomal biogenesis and metabolic proteins were significantly down-regulated in the lung of 1-month-old transgenic mice expressing a constitutively active TGF-β type I receptor kinase (ALK5). The peroxisome biogenesis protein peroxisomal membrane protein Pex13p (PEX13p) as well as the peroxisomal lipid metabolic enzyme peroxisomal acyl-coenzyme A oxidase 1 (ACOX1) and antioxidative enzyme catalase were highly up-regulated in TGF-β type II receptor and Smad3 knockout mice. This study reports a novel mechanism of peroxisome biogenesis and metabolic regulation via TGF-β1-Smad signaling: interaction of the Smad3 transcription factor with the PEX13 gene in chromatin immunoprecipitation-on-chip assay as well as in a bleomycin-induced pulmonary fibrosis model applied to TGF-β type II receptor knockout mice. Taken together, data from this study suggest that TGF-β1 participates in regulation of peroxisomal biogenesis and metabolism via Smad-dependent signaling, opening up novel strategies for the development of therapeutic approaches to inhibit progression of pulmonary fibrosis patients with IPF.

Indexed as

Idiopathic Pulmonary FibrosisTransforming Growth Factor beta1AnimalsBleomycinFibroblastsHumansInfantLungMiceMice, KnockoutMice, TransgenicReceptor, Transforming Growth Factor-beta Type IIBleomycinReceptor, Transforming Growth Factor-beta Type IITransforming Growth Factor beta1

Identifiers

PMID36521562
PMCPMC10013039
OpenAlexW4312085532

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.