Evidence map›Paper›PMID 36519514›Full record

ReviewDevelopment (Cambridge, England)2022

Mammalian DNA methylome dynamics: mechanisms, functions and new frontiers.

Alex Wei, Hao Wu

Abstract readReview
In one paragraph

Review in Development (Cambridge, England), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Overexpression ofZoological research · 2024
    Article
  16. Article
  17. Review
  18. Clinical applications of abnormal DNA methylation in chronic myeloid leukemia.Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Alex WeiDepartment of Genetics, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-0160-9550
Hao WuDepartment of Genetics, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0003-4395-6929

Funding

Data Analysis UnitU2CCA233285 · NCI · CHILDREN'S HOSP OF PHILADELPHIA · PI TAN, KAI · 2018 to 2023
$13.2M
Defining causal roles of genomic variants on gene regulatory networks with spatiotemporally-resolved single-cell multiomicsU01HG012047 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI HONGJUN SONG, Hao Wu · 2021 to 2026
$7.1M
Ultra low-input epigenetic sequencing with combined enzymatic and long-read technologiesR01HG010646 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI Gang Fang, Rahul Manu Kohli · 2019 to 2026
$3.9M
Charting oxygen-sensing gene regulatory network in cardiomyocytes through single-cell analysis and epigenome editingDP2HL142044 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI WU, HAO · 2017 to 2017
$2.4M
Dissecting Gene Regulatory Roles of TET Enzymes and 5-hydroxymethylcytosine in Mammalian Active DNA DemethylationF31HG011429 · NHGRI · UNIVERSITY OF PENNSYLVANIA · PI WEI, ALEX TIANJIUN · 2020 to 2022
$118k
NCI NIH HHS U2C CA233285NCI NIH HHS U2C-CA233285NHGRI NIH HHS F31 HG011429NHGRI NIH HHS R01 HG010646NHGRI NIH HHS U01 HG012047NHGRI NIH HHS U01-HG012047NHLBI NIH HHS DP2 HL142044NHLBI NIH HHS DP2-HL142044NIH HHS F31-HG011429
6 · The paper itself

Abstract

DNA methylation is a highly conserved epigenetic modification that plays essential roles in mammalian gene regulation, genome stability and development. Despite being primarily considered a stable and heritable epigenetic silencing mechanism at heterochromatic and repetitive regions, whole genome methylome analysis reveals that DNA methylation can be highly cell-type specific and dynamic within proximal and distal gene regulatory elements during early embryonic development, stem cell differentiation and reprogramming, and tissue maturation. In this Review, we focus on the mechanisms and functions of regulated DNA methylation and demethylation, highlighting how these dynamics, together with crosstalk between DNA methylation and histone modifications at distinct regulatory regions, contribute to mammalian development and tissue maturation. We also discuss how recent technological advances in single-cell and long-read methylome sequencing, along with targeted epigenome-editing, are enabling unprecedented high-resolution and mechanistic dissection of DNA methylome dynamics.

Indexed as

DNA MethylationEpigenomeAnimalsEpigenesis, GeneticHistone CodeMammalsDNA methylationDNMTEpigenome editingSingle cell epigenomicsTET

Identifiers

PMID36519514
PMCPMC10108609

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.