Evidence map›Paper›PMID 36517238›Full record

ArticlePlant physiology2023

A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors.

Špela Tomaž, Marko Petek, Tjaša Lukan, Karmen Pogačar, Katja Stare, Erica Teixeira Prates, Daniel A Jacobson, Jan Zrimec, Gregor Bajc, Matej Butala and 9 more

Open access · hybridFull text read
In one paragraph

Article in Plant physiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

  1. Expression Profiling and Characterization ofInternational journal of molecular sciences · 2026
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  5. miR398-SlCSD1 module participates in the SA-HJournal of advanced research · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 8 institutions in 4 countries.

Špela TomažDepartment of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.ORCID 0000-0003-2448-0822
Marko PetekDepartment of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.ORCID 0000-0003-3644-7827
Tjaša LukanDepartment of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.ORCID 0000-0002-6235-2816
Karmen PogačarDepartment of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.ORCID 0000-0001-5190-7217
Katja StareDepartment of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.ORCID 0000-0002-3999-9400
Erica Teixeira PratesBiosciences Division, Oak Ridge National Laboratory,, Oak Ridge, Tennessee 37831, USA.ORCID 0000-0002-6581-5054
Daniel A JacobsonBiosciences Division, Oak Ridge National Laboratory,, Oak Ridge, Tennessee 37831, USA.ORCID 0000-0002-9822-8251
Jan ZrimecDepartment of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.ORCID 0000-0002-7099-961X
Gregor BajcDepartment of Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia.ORCID 0000-0002-4507-9678
Matej ButalaDepartment of Biology, Biotechnical Faculty, University of Ljubljana, 1000 Ljubljana, Slovenia.ORCID 0000-0003-2411-3221
Maruša Pompe NovakDepartment of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.ORCID 0000-0003-4176-849X
Quentin DudleyEarlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.ORCID 0000-0002-2987-5172
Nicola PatronEarlham Institute, Norwich Research Park, Norwich NR4 7UZ, UK.ORCID 0000-0002-8389-1851
Ajda Taler-VerčičDepartment of Biochemistry and Molecular and Structural Biology, Jožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0002-1449-0536
Aleksandra UsenikDepartment of Biochemistry and Molecular and Structural Biology, Jožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0003-2366-2886
Dušan TurkDepartment of Biochemistry and Molecular and Structural Biology, Jožef Stefan Institute, 1000 Ljubljana, Slovenia.ORCID 0000-0003-0205-6609
Salomé PratDepartment of Plant Development and Signal Transduction, Centre for Research in Agricultural Genomics, 08193 Cerdanyola, Barcelona, Spain.ORCID 0000-0003-2684-5485
Anna CollDepartment of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.ORCID 0000-0003-0672-1530
Kristina GrudenDepartment of Biotechnology and Systems Biology, National Institute of Biology, 1000 Ljubljana, Slovenia.ORCID 0000-0001-5906-8569
National Institute of Biology · SIUniversity of Ljubljana · SIJožef Stefan Institute · SINorwich Research Park · GBOak Ridge National Laboratory · USCenter for Research in Agricultural Genomics · ESJožef Stefan International Postgraduate School · SIUniversity of Nova Gorica · SI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

TGA (TGACG-binding) transcription factors, which bind their target DNA through a conserved basic region leucine zipper (bZIP) domain, are vital regulators of gene expression in salicylic acid (SA)-mediated plant immunity. Here, we investigated the role of StTGA2.1, a potato (Solanum tuberosum) TGA lacking the full bZIP, which we named a mini-TGA. Such truncated proteins have been widely assigned as loss-of-function mutants. We, however, confirmed that StTGA2.1 overexpression compensates for SA-deficiency, indicating a distinct mechanism of action compared with model plant species. To understand the underlying mechanisms, we showed that StTGA2.1 can physically interact with StTGA2.2 and StTGA2.3, while its interaction with DNA was not detected. We investigated the changes in transcriptional regulation due to StTGA2.1 overexpression, identifying direct and indirect target genes. Using in planta transactivation assays, we confirmed that StTGA2.1 interacts with StTGA2.3 to activate StPRX07, a member of class III peroxidases (StPRX), which are known to play role in immune response. Finally, via structural modeling and molecular dynamics simulations, we hypothesized that the compact molecular architecture of StTGA2.1 distorts DNA conformation upon heterodimer binding to enable transcriptional activation. This study demonstrates how protein truncation can lead to distinct functions and that such events should be studied carefully in other protein families.

Indexed as

Basic-Leucine Zipper Transcription FactorsTranscription FactorsGene ExpressionGene Expression Regulation, PlantTranscriptional ActivationBasic-Leucine Zipper Transcription FactorsTranscription Factors

Identifiers

PMID36517238
PMCPMC10022624
OpenAlexW4311464034

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read32
table measurements read2
reference markers read2
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.