Evidence map›Paper›PMID 36517072›Full record

ArticleJournal of microbiology and biotechnology2023

Exploring the Microbial Community and Functional Characteristics of the Livestock Feces Using the Whole Metagenome Shotgun Sequencing.

Hyeri Kim, Eun Sol Kim, Jin Ho Cho, Minho Song, Jae Hyoung Cho, Sheena Kim, Gi Beom Keum, Jinok Kwak, Hyunok Doo, Sriniwas Pandey and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of microbiology and biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 1 country.

Hyeri KimDepartment of Animal Resources Science, Dankook University, Cheonan, Republic of Korea.
Eun Sol KimDepartment of Animal Resources Science, Dankook University, Cheonan, Republic of Korea.
Jin Ho ChoDepartment of Animal Science, Chungbuk National University, Cheongju, Republic of Korea.
Minho SongDivision of Animal and Dairy Science, Chungnam National University, Daejeon, Republic of Korea.
Jae Hyoung ChoDepartment of Animal Resources Science, Dankook University, Cheonan, Republic of Korea.
Sheena KimDepartment of Animal Resources Science, Dankook University, Cheonan, Republic of Korea.
Gi Beom KeumDepartment of Animal Resources Science, Dankook University, Cheonan, Republic of Korea.
Jinok KwakDepartment of Animal Resources Science, Dankook University, Cheonan, Republic of Korea.
Hyunok DooDepartment of Animal Resources Science, Dankook University, Cheonan, Republic of Korea.
Sriniwas PandeyDepartment of Animal Resources Science, Dankook University, Cheonan, Republic of Korea.
Seung-Hwan ParkKorean Collection for Type Cultures, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Jeongeup, Republic of Korea.
Ju Huck LeeKorean Collection for Type Cultures, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Jeongeup, Republic of Korea.
Hyunjung JungAnimal Nutrition & Physiology Division, National Institute of Animal Science, RDA, Wanju, Republic of Korea.
Tai Young HurAnimal Diseases & Health Division, National Institute of Animal Science, RDA, Wanju, Republic of Korea.
Jae-Kyung KimAdvanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup, Republic of Korea.
Kwang Kyo OhMicrobial Safety Division, National Institute of Agricultural Sciences, Rural Development Administration, Wanju, 55365, Republic of Korea.
Hyeun Bum KimDepartment of Animal Resources Science, Dankook University, Cheonan, Republic of Korea.
Ju-Hoon LeeDepartment of Food Animal Biotechnology, Department of Agricultural Biotechnology, Center for Food and Bioconvergence, Seoul National University, Seoul 08826, Republic of Korea.
Dankook University · KRKorea Research Institute of Bioscience and Biotechnology · KRNational Institute of Animal Science · KRChungnam National University · KRKorea Atomic Energy Research Institute · KRRural Development Administration · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The foodborne illness is the important public health concerns, and the livestock feces are known to be one of the major reservoirs of foodborne pathogens. Also, it was reported that 45.5% of foodborne illness outbreaks have been associated with the animal products contaminated with the livestock feces. In addition, it has been known that the persistence of a pathogens depends on many potential virulent factors including the various virulent genes. Therefore, the first step to understanding the public health risk of livestock feces is to identify and describe microbial communities and potential virulent genes that contribute to bacterial pathogenicity. We used the whole metagenome shotgun sequencing to evaluate the prevalence of foodborne pathogens and to characterize the virulence associated genes in pig and chicken feces. Our data showed that the relative abundance of potential foodborne pathogens, such as

Indexed as

Foodborne DiseasesMicrobiotaAnimalsChickensFecesLivestockMetagenomeSwineFoodborne pathogenslivestocklivestock environmentmetagenome shotgun sequencingpotential virulence

Identifiers

PMID36517072
PMCPMC9896000
OpenAlexW4311461839

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.