Evidence map›Paper›PMID 36516782›Full record

ArticleCell reports2022

Developmental phenomics suggests that H3K4 monomethylation confers multi-level phenotypic robustness.

Lautaro Gandara, Albert Tsai, Måns Ekelöf, Rafael Galupa, Ella Preger-Ben Noon, Theodore Alexandrov, Justin Crocker

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Review
  2. Article
  3. Cereblon influences the timing of muscle differentiation inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 3 countries.

Lautaro GandaraDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Albert TsaiDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany. Electronic address: albert.tsai@embl.de.
Måns EkelöfStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Rafael GalupaDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany.
Ella Preger-Ben NoonDepartment of Genetics and Developmental Biology, The Rappaport Faculty of Medicine and Research Institute, Technion-Israel Institute of Technology, Haifa, Israel.
Theodore AlexandrovStructural and Computational Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany; Molecular Medicine Partnership Unit, European Molecular Biology Laboratory, Heidelberg, Germany; BioInnovation Institute, Copenhagen, Denmark.
Justin CrockerDevelopmental Biology Unit, European Molecular Biology Laboratory, Heidelberg, Germany. Electronic address: justin.crocker@embl.de.
European Molecular Biology Laboratory · DEEuropean Molecular Biology Laboratory · DEEuropean Molecular Biology Organization · DETechnion – Israel Institute of Technology · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

How histone modifications affect animal development remains difficult to ascertain. Despite the prevalence of histone 3 lysine 4 monomethylation (H3K4me1) on enhancers, hypomethylation appears to have minor effects on phenotype and viability. Here, we genetically reduce H3K4me1 deposition in Drosophila melanogaster and find that hypomethylation reduces transcription factor enrichment in nuclear microenvironments, disrupts gene expression, and reduces phenotypic robustness. Using a developmental phenomics approach, we find changes in morphology, metabolism, behavior, and offspring production. However, many phenotypic changes are only detected when hypomethylated flies develop outside of standard laboratory environments or with specific genetic backgrounds. Therefore, quantitative phenomics measurements can unravel how pleiotropic modulators of gene expression affect developmental robustness under conditions resembling the natural environments of a species.

Indexed as

Drosophila melanogasterEnhancer Elements, GeneticAnimalsHistonesPhenomicsPhenotypeHistonesCP: Developmental biologyCP: Molecular biologyevolvabilityH3K4me1nuclear microenvironmentsphenomicsphenotypic capacitorrobustnessshavenbabyultrabithorax

Identifiers

PMID36516782
PMCPMC9764455
OpenAlexW4311989061

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.